RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SLC11A2P49281 568 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 KIF19Q2TAC6 998 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 SCUBE3Q8IX30 993 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 ADAM32Q8TC27 787 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 ADAMTS14Q8WXS8 1223 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 PRICKLE1Q96MT3 831 aaPredicted RBP16.79■□□□□ 0.28
CLN3-246ENST00000636228 METTL14Q9HCE5 456 aaKnown RBP16.79■□□□□ 0.28
CLN3-246ENST00000636228 MAN1B1Q9UKM7 699 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.79■□□□□ 0.28
CLN3-246ENST00000636228 SNX11Q9Y5W9 270 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 SPEGQ15772 3267 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 ZZEF1O43149 2961 aa16.79■□□□□ 0.28
CLN3-246ENST00000636228 PSMA7O14818 248 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 SEMA4FO95754 770 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 CER1O95813 267 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 DNTTP04053 509 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 CAPNS1P04632 268 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 ATP5BP06576 529 aaKnown RBP16.78■□□□□ 0.28
CLN3-246ENST00000636228 NUMBP49757 651 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 ZNF445P59923 1031 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 RPS24P62847 133 aaKnown RBP16.78■□□□□ 0.28
CLN3-246ENST00000636228 RING1Q06587 406 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 SCAPQ12770 1279 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 MMS22LQ6ZRQ5 1243 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 MARCH9Q86YJ5 346 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 MFN1Q8IWA4 741 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 UNC45BQ8IWX7 931 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 CFAP52Q8N1V2 620 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 CARNMT1Q8N4J0 409 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 IRGQQ8WZA9 623 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 BIRC7Q96CA5 298 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 DHTKD1Q96HY7 919 aaPredicted RBP16.78■□□□□ 0.28
CLN3-246ENST00000636228 LMLNQ96KR4 655 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 FCRL2Q96LA5 508 aaPredicted RBP16.78■□□□□ 0.28
CLN3-246ENST00000636228 CEP63Q96MT8 703 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 BTBD1Q9H0C5 482 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 TM9SF3Q9HD45 589 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 INTS6Q9UL03 887 aaKnown RBP16.78■□□□□ 0.28
CLN3-246ENST00000636228 NAALADL1Q9UQQ1 740 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 BTBD3Q9Y2F9 522 aa16.78■□□□□ 0.28
CLN3-246ENST00000636228 FAM47DPA6NHR8 397 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 PCNX2A6NKB5 2137 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 MOCS2O96007 188 aaPredicted RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 ATXN1LP0C7T5 689 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 BMP6P22004 513 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 CTSOP43234 321 aaPredicted RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 AFF3P51826 1226 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 STIM1Q13586 685 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 FSCBQ5H9T9 825 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 KCNT1Q5JUK3 1230 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 NUGGCQ68CJ6 796 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 TTI2Q6NXR4 508 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 IL27RAQ6UWB1 636 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 EHBP1Q8NDI1 1231 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 DQX1Q8TE96 717 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 RHBDD1Q8TEB9 315 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 GANCQ8TET4 914 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 GOLGA1Q92805 767 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 MYO19Q96H55 970 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 HSFY1Q96LI6 401 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 NUCKS1Q9H1E3 243 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 ST7Q9NRC1 585 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 SUN2Q9UH99 717 aa16.77■□□□□ 0.28
CLN3-246ENST00000636228 XPO7Q9UIA9 1087 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 APOBEC2Q9Y235 224 aaKnown RBP16.77■□□□□ 0.28
CLN3-246ENST00000636228 PPP1R3GB7ZBB8 358 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 BIN1O00499 593 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 SIN3BO75182 1162 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 CSKP41240 450 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 STX17P56962 302 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 MPP7Q5T2T1 576 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 SYPL2Q5VXT5 272 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 ZNF776Q68DI1 518 aaPredicted RBP16.76■□□□□ 0.27
CLN3-246ENST00000636228 DENND1BQ6P3S1 775 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 CCNI2Q6ZMN8 369 aaPredicted RBP16.76■□□□□ 0.27
CLN3-246ENST00000636228 DHX40Q8IX18 779 aaKnown RBP16.76■□□□□ 0.27
CLN3-246ENST00000636228 FIBINQ8TAL6 211 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 NELFBQ8WX92 580 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 FAM149B1Q96BN6 582 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 MRGPRX3Q96LB0 322 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 KREMEN1Q96MU8 473 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 PCED1AQ9H1Q7 454 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 SERGEFQ9UGK8 458 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 ANKRD6Q9Y2G4 727 aa16.76■□□□□ 0.27
CLN3-246ENST00000636228 PMM2O15305 246 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 IRAK2O43187 625 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 FBXO21O94952 628 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 ZNF883P0CG24 379 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 GPD2P43304 727 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 IL9RQ01113 521 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 ZBTB16Q05516 673 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 KCNH2Q12809 1159 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 STILQ15468 1287 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 DCAF6Q58WW2 860 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 PRAMEF14Q5SWL7 426 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 C19orf48Q6RUI8 117 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 DBX2Q6ZNG2 339 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 GLRX5Q86SX6 157 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 TAC4Q86UU9 113 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 HJURPQ8NCD3 748 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms