RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TMC7Q7Z402 723 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 RELL1Q8IUW5 271 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 DSELQ8IZU8 1212 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 SIX6OS1Q8N1H7 587 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 SAMD3Q8N6K7 520 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ZNF781Q8N8C0 355 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 LZICQ8WZA0 190 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 LGMNQ99538 433 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 NT5C1AQ9BXI3 368 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 NMRAL1Q9HBL8 299 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 TRPC7Q9HCX4 862 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 ITGA11Q9UKX5 1188 aa11.31□□□□□ -0.6
CLN3-244ENST00000636147 RGSL1A5PLK6 1076 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 SRP72O76094 671 aaKnown RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 NUMBP49757 651 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 GBE1Q04446 702 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 STX5Q13190 355 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ITGADQ13349 1161 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 MTX3Q5HYI7 312 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PPM1LQ5SGD2 360 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 OTUD3Q5T2D3 398 aaPredicted RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 TMEM198Q66K66 360 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 KCNK13Q9HB14 408 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PTPRHQ9HD43 1115 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 TSPAN16Q9UKR8 245 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 AP4E1Q9UPM8 1137 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ANGPT2O15123 496 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 BIRC5O15392 142 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 FOXD2O60548 495 aaPredicted RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 VNN1O95497 513 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PABPC4LP0CB38 370 aaKnown RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 XRCC1P18887 633 aaPredicted RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 RALGDSQ12967 914 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ZBTB17Q13105 803 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 FUT11Q495W5 492 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 SLC39A4Q6P5W5 647 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PACS1Q6VY07 963 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 FAM151AQ8WW52 585 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 AZIN2Q96A70 460 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 MOCOSQ96EN8 888 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 TMEM176AQ96HP8 235 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ELMO2Q96JJ3 720 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 GID8Q9NWU2 228 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 SELENONQ9NZV5 590 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ZNF180Q9UJW8 692 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 A0A088AWK7 358 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 ASS1P00966 412 aaKnown RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 CNTFP26441 200 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PDK2Q15119 407 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 NOMO1Q15155 1222 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 TCEAL1Q15170 157 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 CTC1Q2NKJ3 1217 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 TBCELQ5QJ74 424 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 C15orf52Q6ZUT6 534 aaKnown RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 WDR49Q8IV35 697 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 VPS39Q96JC1 886 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 BEGAINQ9BUH8 593 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 SNRNP25Q9BV90 132 aaKnown RBP11.3□□□□□ -0.6
CLN3-244ENST00000636147 IDI2Q9BXS1 227 aa11.3□□□□□ -0.6
CLN3-244ENST00000636147 PKD1L3Q7Z443 1732 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SPATA31A5Q5VU36 1347 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SPATA31A7Q8IWB4 1347 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ATP6AP2A0A1C7CYW4 349 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 WDR46O15213 610 aaKnown RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 CLOCKO15516 846 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 PLIN3O60664 434 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ATP6AP2O75787 350 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ERBB2P04626 1255 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ITGAXP20702 1163 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SULT1E1P49888 294 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 THOP1P52888 689 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 HPCAP84074 193 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 INPP5AQ14642 412 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 TLR1Q15399 786 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 MAPRE2Q15555 327 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 BRSK2Q8IWQ3 736 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 CLEC4FQ8N1N0 589 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 HTR3CQ8WXA8 447 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 ATP6V1E2Q96A05 226 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 PHF21BQ96EK2 531 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 VPS50Q96JG6 964 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 KLHL25Q9H0H3 589 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 NOL11Q9H8H0 719 aaKnown RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 ZNF277Q9NRM2 450 aaPredicted RBP11.29□□□□□ -0.6
CLN3-244ENST00000636147 UBIAD1Q9Y5Z9 338 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 PLIN4Q96Q06 1357 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 HEATR9A2RTY3 570 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SYCE1LA8MT33 242 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 RNF103O00237 685 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 TP73O15350 636 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 HMOX2P30519 316 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 GRIA3P42263 894 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 SLC18A2Q05940 514 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 MYBPC3Q14896 1274 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 DLG2Q15700 870 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 TMCO5AQ8N6Q1 288 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 PLD5Q8N7P1 536 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 OR52K1Q8NGK4 314 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 BTBD9Q96Q07 612 aa11.29□□□□□ -0.6
CLN3-244ENST00000636147 TRIM15Q9C019 465 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms