RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ARP10275 920 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ALADP13716 330 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 KRTAP10-5P60370 271 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 SHBQ15464 509 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 KIAA0753Q2KHM9 967 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 P3H1Q32P28 736 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 MINDY4Q4G0A6 757 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ARHGAP29Q52LW3 1261 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 Q5PR19 223 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ASPHD1Q5U4P2 390 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 RRAGBQ5VZM2 374 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ATG9BQ674R7 924 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 CXorf57Q6NSI4 855 aaKnown RBP3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ACSM6Q6P461 480 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 DARS2Q6PI48 645 aaKnown RBP3.35□□□□□ -1.87
SCN1A-208ENST00000625916 CYB5R4Q7L1T6 521 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 LAS2Q8IYD9 372 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 CLASRPQ8N2M8 674 aaKnown RBP3.35□□□□□ -1.87
SCN1A-208ENST00000625916 GLMPQ8WWB7 406 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 OVCA2Q8WZ82 227 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 MSLNLQ96KJ4 702 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 PRDM16Q9HAZ2 1276 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 PLAC1Q9HBJ0 212 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ZBTB26Q9HCK0 441 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 TBC1D14Q9P2M4 693 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 A0A1B0GVT2 93 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 DENND3A2RUS2 1198 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 GAGE12JA6NER3 117 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 A6NNZ2 444 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 BTBD18B2RXH4 712 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 INAFM1C9JVW0 142 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 GOLIM4O00461 696 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 ZSCAN9O15535 394 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-208ENST00000625916 PLGP00747 810 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-208ENST00000625916 KLKB1P03952 638 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 PRSS2P07478 247 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 RFPL3SP0C7P2 107 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 HOXD3P31249 432 aaPredicted RBP3.34□□□□□ -1.87
SCN1A-208ENST00000625916 EPHB1P54762 984 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 ERVFC1-1P60608 527 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 GPR18Q14330 331 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 KIAA1755Q5JYT7 1200 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 FAXCQ5TGI0 409 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 CCDC144NLQ6NUI1 221 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 CRTC1Q6UUV9 634 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 PRSS57Q6UWY2 283 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 KRT28Q7Z3Y7 464 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 GPSM1Q86YR5 675 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 FAM156AQ8NDB6 213 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 URB1-AS1Q96HZ7 61 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 MAP6D1Q9H9H5 199 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 SPAG4Q9NPE6 437 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 RXFP3Q9NSD7 469 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 FZD10Q9ULW2 581 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 B3GNT3Q9Y2A9 372 aa3.34□□□□□ -1.87
SCN1A-208ENST00000625916 BECN2A8MW95 431 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 FOXO6A8MYZ6 492 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 THAP12O43422 761 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 SPRY3O43610 288 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 SOCS5O75159 536 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 PDGFRBP09619 1106 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 PEX2P28328 305 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 ANAPC15P60006 121 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 CBFBQ13951 182 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 OTUD1Q5VV17 481 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-208ENST00000625916 TLDC1Q6P9B6 456 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 SPSB3Q6PJ21 355 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 FAM83HQ6ZRV2 1179 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-208ENST00000625916 SLC16A12Q6ZSM3 486 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 IQCDQ96DY2 449 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 ZNF347Q96SE7 839 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 STRBPQ96SI9 672 aaKnown RBP3.33□□□□□ -1.88
SCN1A-208ENST00000625916 ZNF556Q9HAH1 456 aa3.33□□□□□ -1.88
SCN1A-208ENST00000625916 G3BP2Q9UN86 482 aaKnown RBP3.33□□□□□ -1.88
SCN1A-208ENST00000625916 SMTNL1A8MU46 457 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 F8W8V4 182 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 RGS14O43566 566 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 DDNO94850 711 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-208ENST00000625916 ARSBP15848 533 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 TGM2P21980 687 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 CLCN5P51795 746 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 Q0VFX4 171 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 GPS2Q13227 327 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 KRT27Q7Z3Y8 459 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 CADM3Q8N126 398 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 OR52N4Q8NGI2 321 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 LRRC46Q96FV0 321 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 ZNF419Q96HQ0 510 aaPredicted RBP3.32□□□□□ -1.88
SCN1A-208ENST00000625916 GPATCH3Q96I76 525 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.32□□□□□ -1.88
SCN1A-208ENST00000625916 SNX13Q9Y5W8 968 aa3.32□□□□□ -1.88
SCN1A-208ENST00000625916 hCG_2014768A0A024R1R8 64 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 A0A087WZ62 844 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 A0A1B0GUV1 79 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 NTN3O00634 580 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 PPP6R2O75170 966 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 CNTN5O94779 1100 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 RPL17P18621 184 aaKnown RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 TCEA1P23193 301 aaKnown RBP3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms