RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 PFDN1O60925 122 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ITGAVP06756 1048 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 MORF4L2Q15014 288 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 OLFML1Q6UWY5 402 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 KLHL23Q8NBE8 558 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 GALNT8Q9NY28 637 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ZC3H7BQ9UGR2 993 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 CLUHO75153 1309 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 PDK4Q16654 411 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 B3GALNT2Q8NCR0 500 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 SLC35F5Q8WV83 523 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ABTB1Q969K4 478 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 IFT43Q96FT9 208 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 DNAJC1Q96KC8 554 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 SENP8Q96LD8 212 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 FAM210AQ96ND0 272 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 UNKQ9C0B0 810 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 VCX3BQ9H321 246 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 VCX3AQ9NNX9 186 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 LNPEPQ9UIQ6 1025 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 H3BRJ5 948 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 STK10O94804 968 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ENO1P06733 434 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 TPH1P17752 444 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 BDNFP23560 247 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ARL4AP40617 200 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 OR1G1P47890 313 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 DCAF4L1Q3SXM0 396 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 LRRC38Q5VT99 294 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 HEATR6Q6AI08 1181 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 TRMT10BQ6PF06 316 aaKnown RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 CEP128Q6ZU80 1094 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ZNF410Q86VK4 478 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 TTC13Q8NBP0 860 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 HIPK4Q8NE63 616 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 CMASQ8NFW8 434 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 KBTBD7Q8WVZ9 684 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 MAML1Q92585 1016 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 NSL1Q96IY1 281 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ULBP1Q9BZM6 244 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 TSPYL2Q9H2G4 693 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 ZNF395Q9H8N7 513 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 DMAP1Q9NPF5 467 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 PRDM5Q9NQX1 630 aaPredicted RBP14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 RPS6KL1Q9Y6S9 549 aa14.9□□□□□ -0.02
SHROOM1-208ENST00000617339 LOXHD1Q8IVV2 1947 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 TTC3P53804 2025 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 C2CD2LO14523 706 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 NRP1O14786 923 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 IL4RP24394 825 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 ARFIP2P53365 341 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 KDSRQ06136 332 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 PTK7Q13308 1070 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 PID1Q7Z2X4 250 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 PQLC3Q8N755 202 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 ATP11CQ8NB49 1132 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 TCP10LQ8TDR4 215 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 MECRQ9BV79 373 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 KATNAL1Q9BW62 490 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 AGO3Q9H9G7 860 aaKnown RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 CXorf49A8MYA2 514 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 ZNF865P0CJ78 1059 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 CDH5P33151 784 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 USP46P62068 366 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 NR1H3Q13133 447 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 GOLGA4Q13439 2230 aaKnown RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 DEFB115Q30KQ5 88 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 ZNF513Q8N8E2 541 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 DDIT4Q9NX09 232 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 PDP2Q9P2J9 529 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 TRIM17Q9Y577 477 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 ATP9BO43861 1147 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 F2P00734 622 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 GDF6Q6KF10 455 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 DEFB128Q7Z7B8 93 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 CD99L2Q8TCZ2 262 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 PTPRN2Q92932 1015 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 NKD2Q969F2 451 aaPredicted RBP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 CLIC5Q9NZA1 410 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 LGALS13Q9UHV8 139 aa14.89□□□□□ -0.03
SHROOM1-208ENST00000617339 TCRBV9S1A1TA0A576 114 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 YJEFN3A6XGL0 299 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 B2RBV5 119 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 PTPN1P18031 435 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 PHBP35232 272 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 OCRLQ01968 901 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 BST2Q10589 180 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 BOLA3Q53S33 107 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 SLC45A4Q5BKX6 768 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 APLFQ8IW19 511 aaPredicted RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 SMG8Q8ND04 991 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 C3orf58Q8NDZ4 430 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FBXO27Q8NI29 283 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 AGR3Q8TD06 166 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 SNRNP27Q8WVK2 155 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 GATA6Q92908 595 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 B3GALT6Q96L58 329 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 NRDE2Q9H7Z3 1164 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms