RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 SHROOM3Q8TF72 1996 aa14.73□□□□□ -0.05
USP39-220ENST00000613444 EPOPA6NHQ4 379 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 RFPL2O75678 378 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 APOEP02649 317 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 HMBSP08397 361 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 ZSCAN5DPP0CG00 497 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 ETS1P14921 441 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 EPHB2P29323 1055 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 HTR7P34969 479 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 TRIP13Q15645 432 aaPredicted RBP14.72□□□□□ -0.05
USP39-220ENST00000613444 ZDHHC24Q6UX98 284 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 ADGRD2Q7Z7M1 963 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 TP53INP2Q8IXH6 220 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 ZFRQ96KR1 1074 aaKnown RBP14.72□□□□□ -0.05
USP39-220ENST00000613444 SLC22A12Q96S37 553 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 PRMT1Q99873 361 aaKnown RBP14.72□□□□□ -0.05
USP39-220ENST00000613444 KLF16Q9BXK1 252 aaPredicted RBP14.72□□□□□ -0.05
USP39-220ENST00000613444 KLC2Q9H0B6 622 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 FAM114A2Q9NRY5 505 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 ZDHHC18Q9NUE0 388 aa14.72□□□□□ -0.05
USP39-220ENST00000613444 HELZP42694 1942 aaKnown RBP14.72□□□□□ -0.05
USP39-220ENST00000613444 E9PAM4 449 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 PER2O15055 1255 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 CCL16O15467 120 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 LPXNO60711 386 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 SEC31AO94979 1220 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 KRT14P02533 472 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 SRGAP2BP0DMP2 458 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 GABRR2P28476 465 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 BMP8BP34820 402 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 XRCC4Q13426 336 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 RAB30Q15771 203 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 PABPC1LQ4VXU2 614 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 PPM1LQ5SGD2 360 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 PPP2R2DQ66LE6 453 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 NADSYN1Q6IA69 706 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 ATP6V0D2Q8N8Y2 350 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 NETO2Q8NC67 525 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 LRRN4Q8WUT4 740 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 MYO18AQ92614 2054 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 CHD5Q8TDI0 1954 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 NYNRINQ9P2P1 1898 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 IGLV3-10A0A075B6K4 115 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 BCLAF3A2AJT9 711 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 HOXA9P31269 272 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 EPHA5P54756 1037 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 NRLP54845 237 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 AUHQ13825 339 aaKnown RBP14.71□□□□□ -0.05
USP39-220ENST00000613444 NUGGCQ68CJ6 796 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 TXNDC8Q6A555 127 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 TMCO3Q6UWJ1 677 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 GSTA5Q7RTV2 222 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 CCDC33Q8N5R6 958 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 TBC1D31Q96DN5 1066 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 RTP4Q96DX8 246 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 CYP2S1Q96SQ9 504 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 PCDH9Q9HC56 1237 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 GKN1Q9NS71 199 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 HCFC1R1Q9NWW0 138 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 MSRAQ9UJ68 235 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 HCFC2Q9Y5Z7 792 aa14.71□□□□□ -0.05
USP39-220ENST00000613444 H7C0C1 242 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 SGK1O00141 431 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 STC2O76061 302 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 KLKB1P03952 638 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 FAM153BP0C7A2 387 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 RBL1P28749 1068 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 CCR2P41597 374 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ATP5OP48047 213 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 IRAK1P51617 712 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 COG7P83436 770 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ZXDBP98169 803 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 FAM153CQ494X1 144 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 DARS2Q6PI48 645 aaKnown RBP14.7□□□□□ -0.06
USP39-220ENST00000613444 CCDC89Q8N998 374 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 FAM71DQ8N9W8 422 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 GDPD5Q8WTR4 605 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ARNTL2Q8WYA1 636 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 WBP2Q969T9 261 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 QKIQ96PU8 341 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP39-220ENST00000613444 NACA2Q9H009 215 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ARFGAP3Q9NP61 516 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ASIC3Q9UHC3 531 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 FAM153AQ9UHL3 310 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ERLIN1O75477 346 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 STIP1P31948 543 aaKnown RBP14.7□□□□□ -0.06
USP39-220ENST00000613444 CYP4F8P98187 520 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 SLC45A4Q5BKX6 768 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 NLRP14Q86W24 1093 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ADAMTS19Q8TE59 1207 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP39-220ENST00000613444 PLD4Q96BZ4 506 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 MYEOVQ96EZ4 313 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 CORO1BQ9BR76 489 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 ADAM7Q9H2U9 754 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 WHRNQ9P202 907 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 PPARGC1AQ9UBK2 798 aaKnown RBP14.7□□□□□ -0.06
USP39-220ENST00000613444 SLC12A6Q9UHW9 1150 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 VANGL2Q9ULK5 521 aa14.7□□□□□ -0.06
USP39-220ENST00000613444 C2orf16Q68DN1 1984 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms