RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GOLGA6L19H0YKK7 550 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 M0QYT0 321 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 TBL1XO60907 577 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ENDOD1O94919 500 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 MOCS2O96007 188 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 C7P10643 843 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 TACR2P21452 398 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 NSFP46459 744 aaKnown RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 PXNP49023 591 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 RPS24P62847 133 aaKnown RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ARID5AQ03989 594 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 C1QBPQ07021 282 aaKnown RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 SRSF5Q13243 272 aaKnown RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 C5orf22Q49AR2 442 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ARTNQ5T4W7 220 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ADIPOR2Q86V24 386 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 C3orf20Q8ND61 904 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 FIBINQ8TAL6 211 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 TBCBQ99426 244 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ANLNQ9NQW6 1124 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 METTL5Q9NRN9 209 aaKnown RBP16.71■□□□□ 0.27
TRIM28-213ENST00000598355 ELOVL2Q9NXB9 296 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 DMXL1Q9Y485 3027 aa16.71■□□□□ 0.27
TRIM28-213ENST00000598355 F9P00740 461 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 PABPC1P11940 636 aaKnown RBP16.7■□□□□ 0.26
TRIM28-213ENST00000598355 HOXB2P14652 356 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 SULT1E1P49888 294 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 UBASH3AP57075 661 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 TTC39BQ5VTQ0 682 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-213ENST00000598355 RAP1GAP2Q684P5 730 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 CHSY1Q86X52 802 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 ZNF683Q8IZ20 524 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 AHI1Q8N157 1196 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 IQCDQ96DY2 449 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 POLMQ9NP87 494 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-213ENST00000598355 ABCB8Q9NUT2 735 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 GGA2Q9UJY4 613 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 ITIH6Q6UXX5 1313 aa16.7■□□□□ 0.26
TRIM28-213ENST00000598355 CEP250Q9BV73 2442 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 FAM170AA1A519 330 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 TYW5A2RUC4 315 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 C2CD4BA6NLJ0 364 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 F5H5T6 163 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 GOLGA8SH3BPF8 625 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 TIMM44O43615 452 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 RPP40O75818 363 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 LUC7L3O95232 432 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 CALB1P05937 261 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 ABCB4P21439 1286 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 PTPN9P43378 593 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 RNASE9P60153 205 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 NME3Q13232 169 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 E2F5Q15329 346 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 LAIR1Q6GTX8 287 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 ANO7Q6IWH7 933 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 MFN1Q8IWA4 741 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 CHPFQ8IZ52 775 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 LGI2Q8N0V4 545 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 UCMAQ8WVF2 138 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 RUBCNQ92622 972 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 ZC3H10Q96K80 434 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 CFAP57Q96MR6 1250 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 NUP58Q9BVL2 599 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 TSPY26PQ9H489 355 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 CACNA2D2Q9NY47 1150 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 ADAM22Q9P0K1 906 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 SLC12A6Q9UHW9 1150 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 INTS6Q9UL03 887 aaKnown RBP16.69■□□□□ 0.26
TRIM28-213ENST00000598355 HS3ST4Q9Y661 456 aa16.69■□□□□ 0.26
TRIM28-213ENST00000598355 SYNJ2BP-COX16A0A087WUM0 186 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 A0A1B0GVM2 712 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 TCAF2A6NFQ2 919 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 PAGE1O75459 146 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 ALDH1A2O94788 518 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 ADCY5O95622 1261 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 GABRG2P18507 467 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 CD70P32970 193 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 RDXP35241 583 aaKnown RBP16.68■□□□□ 0.26
TRIM28-213ENST00000598355 IL12RB1P42701 662 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 DEUP1Q05D60 604 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 LMAN2Q12907 356 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 SIM2Q14190 667 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-213ENST00000598355 ZNF234Q14588 700 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 ASIC2Q16515 512 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 PTPRNQ16849 979 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 FUT11Q495W5 492 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 PPP1R15BQ5SWA1 713 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 SFMBT2Q5VUG0 894 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 KIAA1211LQ6NV74 962 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 PPP1R2P3Q6NXS1 205 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 FBXL22Q6P050 247 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 CHST9Q7L1S5 443 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 ZNF571Q7Z3V5 609 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-213ENST00000598355 EMC1Q8N766 993 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 JOSD2Q8TAC2 188 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 CENPIQ92674 756 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-213ENST00000598355 SYN2Q92777 582 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-213ENST00000598355 VCPIP1Q96JH7 1222 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 TMEM245Q9H330 911 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 COX16Q9P0S2 106 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms