RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 C15orf59Q2T9L4 293 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF569Q5MCW4 686 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 OTUD1Q5VV17 481 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 SNX30Q5VWJ9 437 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 BEND5Q7L4P6 421 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 BNIPLQ7Z465 357 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 ITIH5Q86UX2 942 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 TMC8Q8IU68 726 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 SLC35F6Q8N357 371 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 SPEM1Q8N4L4 309 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 FNIP1Q8TF40 1166 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 EDEM1Q92611 657 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 CENPIQ92674 756 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 FAM149B1Q96BN6 582 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF512Q96ME7 567 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 CFAP57Q96MR6 1250 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 WDR24Q96S15 920 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 UBL7Q96S82 380 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 NPY6RQ99463 290 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 SCUBE2Q9NQ36 999 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 DNMT3BQ9UBC3 853 aaKnown RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 IP6K2Q9UHH9 426 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 DOPEY2Q9Y3R5 2298 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 MTCL1Q9Y4B5 1905 aaKnown RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF840PA6NDX5 716 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 TMEM110-MUSTN1A8MSY1 372 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 K7ESF4 209 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 KIF5CO60282 957 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 PAPSS2O95340 614 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 FTCDO95954 541 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 POU2F2P09086 479 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 HNRNPA1P09651 372 aaKnown RBP eCLIP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 NCAM1P13591 858 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 TCF4P15884 667 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 COMTP21964 271 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 PSMA2P25787 234 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 HOXA9P31269 272 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 PTPN9P43378 593 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 EPHA5P54756 1037 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 GNG11P61952 73 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 ETF1P62495 437 aaKnown RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 EIF4EBP2Q13542 120 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 PIGHQ14442 188 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 VEPH1Q14D04 833 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 IFI16Q16666 785 aaKnown RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 DCAF6Q58WW2 860 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 C11orf63Q6NUN7 778 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 GAREM2Q75VX8 874 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 NT5DC3Q86UY8 548 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 KBTBD6Q86V97 674 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF276Q8N554 614 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 NIPA2Q8N8Q9 360 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 DEFB124Q8NES8 71 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 OVCA2Q8WZ82 227 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 FGF13Q92913 245 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 TBCBQ99426 244 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 CNPY3Q9BT09 278 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 TLR8Q9NR97 1041 aaKnown RBP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 ABCC13Q9NSE7 274 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.82□□□□□ -0.84
TRIM28-208ENST00000597172 HCFC1R1Q9NWW0 138 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 CLIC5Q9NZA1 410 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 EHD2Q9NZN4 543 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 NUDT5Q9UKK9 219 aa9.82□□□□□ -0.84
TRIM28-208ENST00000597172 UBR5O95071 2799 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 MYH10P35580 1976 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CAPN9O14815 690 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 MOSPD3O75425 235 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TBX18O95935 607 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 IGLV3-25P01717 112 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 RARGP13631 454 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 PTPN2P17706 415 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 SDC4P31431 198 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 MAN1A1P33908 653 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CCR2P41597 374 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 PSEN1P49768 467 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 HDAC4P56524 1084 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TAS2R40P59535 323 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 NTHL1P78549 312 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 ATP11AP98196 1134 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 GAS6Q14393 721 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TAF12Q16514 161 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 SLC25A52Q3SY17 297 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 MEI1Q5TIA1 1274 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 BTBD8Q5XKL5 378 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CC2D1AQ6P1N0 951 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 POTEHQ6S545 545 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 DAAM2Q86T65 1068 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 WDR5BQ86VZ2 330 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 ARHGAP18Q8N392 663 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TRIM58Q8NG06 486 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 DQX1Q8TE96 717 aaKnown RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 GAB3Q8WWW8 586 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 GOLGA1Q92805 767 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CD101Q93033 1021 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TCEAL4Q96EI5 215 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 C16orf45Q96MC5 204 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 SLITRK1Q96PX8 696 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CORO1BQ9BR76 489 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 RNF38Q9H0F5 515 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms