RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 DLDP09622 509 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 POLR2EP19388 210 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CDK11BP21127 795 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 ABCB4P21439 1286 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 PRKCHP24723 683 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CCR1P32246 355 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CDH5P33151 784 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 PTGER3P43115 390 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 COPB1P53618 953 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 PITX1P78337 314 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CDH18Q13634 790 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 LYSMD4Q5XG99 296 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 MBLAC2Q68D91 279 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 TCEAL6Q6IPX3 200 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 ARMCX6Q7L4S7 300 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CHSY1Q86X52 802 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 LGI2Q8N0V4 545 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CFAP52Q8N1V2 620 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CARNMT1Q8N4J0 409 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 ATP6V0D2Q8N8Y2 350 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 MSANTD4Q8NCY6 345 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF397Q8NF99 534 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 WFDC5Q8TCV5 224 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 CYB5D2Q8WUJ1 264 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 PIGKQ92643 395 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 TCEAL3Q969E4 200 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 MKRN2Q9H000 416 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 NAT10Q9H0A0 1025 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 SLC6A17Q9H1V8 727 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 GANQ9H2C0 597 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 COX16Q9P0S2 106 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 XPO7Q9UIA9 1087 aaKnown RBP15.82■□□□□ 0.12
TRIM28-203ENST00000593582 DAAM1Q9Y4D1 1078 aa15.82■□□□□ 0.12
TRIM28-203ENST00000593582 IGHV1OR15-9A0A0B4J2B8 117 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 F5H5T6 163 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 KHNYNO15037 678 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 DAB1O75553 588 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 TACR2P21452 398 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 CD70P32970 193 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 NOS2P35228 1153 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 DPP6P42658 865 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 KLK7P49862 253 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 LIMK1P53667 647 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 POLR2FP61218 127 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 TYRO3Q06418 890 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 NME3Q13232 169 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 MTA1Q13330 715 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 EIF4EBP2Q13542 120 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 RAP1GAP2Q684P5 730 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 IL31Q6EBC2 164 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 RALGAPA1Q6GYQ0 2036 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 NOP9Q86U38 636 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 METTL3Q86U44 580 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 ERICH1Q86X53 443 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 TMPRSS6Q8IU80 811 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 SYT12Q8IV01 421 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 EPS8L1Q8TE68 723 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 DDX1Q92499 740 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 PRCCQ92733 491 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 C18orf8Q96DM3 657 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 MYEOVQ96EZ4 313 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 SIPA1Q96FS4 1042 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 PCMTD1Q96MG8 357 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 RXFP3Q9NSD7 469 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 RRN3Q9NYV6 651 aa15.81■□□□□ 0.12
TRIM28-203ENST00000593582 LIMA1Q9UHB6 759 aaKnown RBP15.81■□□□□ 0.12
TRIM28-203ENST00000593582 ABCA7Q8IZY2 2146 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 DCDC2BA2VCK2 349 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 H0Y626 953 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 NDUFS2O75306 463 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 GFPT2O94808 682 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 LUC7L3O95232 432 aaKnown RBP15.8■□□□□ 0.12
TRIM28-203ENST00000593582 ACADMP11310 421 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 HLA-EP13747 358 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 MATKP42679 507 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 GABRB2P47870 512 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 RNASE9P60153 205 aaKnown RBP15.8■□□□□ 0.12
TRIM28-203ENST00000593582 UBXN1Q04323 297 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 LMAN2Q12907 356 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 SYCP1Q15431 976 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 STPG1Q5TH74 334 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF677Q86XU0 584 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 DEFB119Q8N690 84 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 SPAG5Q96R06 1193 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 TMEM245Q9H330 911 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.8■□□□□ 0.12
TRIM28-203ENST00000593582 TMEM63CQ9P1W3 806 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 STAP1Q9ULZ2 295 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 CACNA1AO00555 2505 aa15.8■□□□□ 0.12
TRIM28-203ENST00000593582 LRRC10BA6NIK2 292 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 LGALS16A8MUM7 142 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 M0QYT0 321 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 MOCS3O95396 460 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 MMEP08473 750 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF18P17022 549 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 ITPKAP23677 461 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 CD6P30203 668 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 OXTRP30559 389 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 HOXD12P35452 270 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 SOX5P35711 763 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms