RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CYS1Q717R9 158 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TAC4Q86UU9 113 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 LRRTM3Q86VH5 581 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TAX1BP1Q86VP1 789 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 CAND1Q86VP6 1230 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 ANKRD42Q8N9B4 389 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 COLGALT1Q8NBJ5 622 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 CCDC197Q8NCU1 140 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 DQX1Q8TE96 717 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 SLC44A1Q8WWI5 657 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 RNF34Q969K3 372 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 HDAC11Q96DB2 347 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 P2RY11Q96G91 374 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 SEC16BQ96JE7 1060 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 C8orf48Q96LL4 319 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 HAPLN3Q96S86 360 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 VAT1Q99536 393 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 PLCD4Q9BRC7 762 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 WDR83Q9BRX9 315 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 TMEM175Q9BSA9 504 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 NAT9Q9BTE0 207 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 MRPL9Q9BYD2 267 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 MAGEB5Q9BZ81 275 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TKTL2Q9H0I9 626 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 FBXO44Q9H4M3 255 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 PRDM12Q9H4Q4 367 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 COMMD8Q9NX08 183 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 ARHGEF38Q9NXL2 777 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 ZC3H7BQ9UGR2 993 aaKnown RBP11.6□□□□□ -0.55
LIG3-204ENST00000585740 ZNF180Q9UJW8 692 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TRHDEQ9UKU6 1024 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 LRFN2Q9ULH4 789 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 PCDHB5Q9Y5E4 795 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 FAM169AQ9Y6X4 670 aa11.6□□□□□ -0.55
LIG3-204ENST00000585740 TANC1Q9C0D5 1861 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 VWA8A3KMH1 1905 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 TCRBV9S1A1TA0A576 114 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ERI2A8K979 691 aaKnown RBP11.59□□□□□ -0.55
LIG3-204ENST00000585740 AP3B1O00203 1094 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 RNF103O00237 685 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ENPP3O14638 875 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 TNFRSF10BO14763 440 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 FGF10O15520 208 aaPredicted RBP11.59□□□□□ -0.55
LIG3-204ENST00000585740 PSMD3O43242 534 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 FAM155BO75949 473 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 MAP3K6O95382 1288 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 METTL18O95568 372 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ITGB1P05556 798 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 PRKCHP24723 683 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SERPINB9P50453 376 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 RABGGTBP53611 331 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SLC5A3P53794 718 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 NRLP54845 237 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 CORO7P57737 925 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 NRG1Q02297 640 aaPredicted RBP11.59□□□□□ -0.55
LIG3-204ENST00000585740 PPIDQ08752 370 aaKnown RBP11.59□□□□□ -0.55
LIG3-204ENST00000585740 GALNT2Q10471 571 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 NAB1Q13506 487 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SPARCL1Q14515 664 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ITIH4Q14624 930 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 PPP2R5DQ14738 602 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SLC39A12Q504Y0 691 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 PLEKHG4Q58EX7 1191 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 FAXCQ5TGI0 409 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ITPRIPL1Q6GPH6 555 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ZNF280DQ6N043 979 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SLC26A11Q86WA9 606 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ZNF280BQ86YH2 543 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 FAM126BQ8IXS8 530 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 LRRC34Q8IZ02 419 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 NUP93Q8N1F7 819 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 LZTR1Q8N653 840 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 DEFB123Q8N688 67 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 CCNYQ8ND76 341 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 GSDMBQ8TAX9 411 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ADAM32Q8TC27 787 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 MGARPQ8TDB4 240 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 DCAKDQ8WVC6 231 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 EDEM1Q92611 657 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 GRAMD1AQ96CP6 724 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 CFAP36Q96G28 342 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 CABS1Q96KC9 395 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 TMEM209Q96SK2 561 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 EBNA1BP2Q99848 306 aaKnown RBP11.59□□□□□ -0.55
LIG3-204ENST00000585740 RHOBTB2Q9BYZ6 727 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SMOC2Q9H3U7 446 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 CATSPERBQ9H7T0 1116 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 OR12D3Q9UGF7 316 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 ADAM28Q9UKQ2 775 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SCML2Q9UQR0 700 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 TTLL3Q9Y4R7 772 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 PCDHA11Q9Y5I1 949 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 TTC3P53804 2025 aa11.59□□□□□ -0.55
LIG3-204ENST00000585740 SDR42E2A6NKP2 422 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 H7C4K7 107 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 TM9SF1O15321 606 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 APOEP02649 317 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 MT-ND3P03897 115 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 SLC2A3P11169 496 aa11.58□□□□□ -0.56
LIG3-204ENST00000585740 CREB1P16220 341 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms