RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	NOCT	Q9UK39	431 aa	Known RBP	13.82	□□□□□ -0.2
SREBF1-223	ENST00000584760	DAAM1	Q9Y4D1	1078 aa		13.82	□□□□□ -0.2
SREBF1-223	ENST00000584760	GOLGA6L7	A0A1B0GV03	622 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	TCRBV21S2A2	A0A5A6	115 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	CDX4	O14627	284 aa	Predicted RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	DAB1	O75553	588 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	GRAP2	O75791	330 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	ALDH1A2	O94788	518 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	GFPT2	O94808	682 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	LSM8	O95777	96 aa	Known RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	MME	P08473	750 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	GABRG2	P18507	467 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	SOX5	P35711	763 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	WAS	P42768	502 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	IRX4	P78413	519 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	SLC6A3	Q01959	620 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	ENPP2	Q13822	863 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	KLHL40	Q2TBA0	621 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	EFHC1	Q5JVL4	640 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	MPP7	Q5T2T1	576 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	OTUD1	Q5VV17	481 aa	Predicted RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	TMEM215	Q68D42	235 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	OR6B2	Q6IFH4	312 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	KIAA1211L	Q6NV74	962 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	CYP2U1	Q7Z449	544 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	DHX40	Q8IX18	779 aa	Known RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	DEFB106A	Q8N104	65 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.81	□□□□□ -0.2	2e-6	■■■■■ 44.8
SREBF1-223	ENST00000584760	ZNF397	Q8NF99	534 aa	Predicted RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	WFDC5	Q8TCV5	224 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	HMGB4	Q8WW32	186 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	TMA16	Q96EY4	203 aa	Known RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	MYEOV	Q96EZ4	313 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	NUCKS1	Q9H1E3	243 aa	Known RBP	13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	SYNC	Q9H7C4	482 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	NLRC4	Q9NPP4	1024 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	CACNA2D2	Q9NY47	1150 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	BAHCC1	Q9P281	2608 aa		13.81	□□□□□ -0.2
SREBF1-223	ENST00000584760	ATRX	P46100	2492 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	TMEM8B	A6NDV4	472 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	SRRM3	A6NNA2	597 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	MOCS2	O96007	188 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	APOE	P02649	317 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	CSRP1	P21291	193 aa	Known RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	BCKDHB	P21953	392 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	GABRB2	P47870	512 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	DHPS	P49366	369 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	SNX16	P57768	344 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	NOMO3	P69849	1222 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	UBXN1	Q04323	297 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZC3H12A	Q5D1E8	599 aa	Known RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	MS4A13	Q5J8X5	152 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	PMS2CL	Q68D20	193 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZNF677	Q86XU0	584 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	ZDHHC17	Q8IUH5	632 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	HJURP	Q8NCD3	748 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	DEFB124	Q8NES8	71 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	SLC20A1	Q8WUM9	679 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	PIGK	Q92643	395 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	PDCL3	Q9H2J4	239 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	FAM204A	Q9H8W3	233 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	DDIT4	Q9NX09	232 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	ELOVL2	Q9NXB9	296 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	RAD54B	Q9Y620	910 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	STON1	Q9Y6Q2	735 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	FAM208B	Q5VWN6	2430 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	DOCK4	Q8N1I0	1966 aa		13.8	□□□□□ -0.2
SREBF1-223	ENST00000584760	KCNU1	A8MYU2	1149 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	WASH3P	C4AMC7	463 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	NPC1	O15118	1278 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	TBL1X	O60907	577 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	CHRNB2	P17787	502 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	CDK11B	P21127	795 aa	Known RBP	13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	SCNN1A	P37088	669 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	P2RY2	P41231	377 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	IL12RB1	P42701	662 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	RPS24	P62847	133 aa	Known RBP	13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	CDK17	Q00537	523 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	FMO1	Q01740	532 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	CDR2	Q01850	454 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	ACAP1	Q15027	740 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	MAP7D1	Q3KQU3	841 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	NAA35	Q5VZE5	725 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	C11orf74	Q86VG3	221 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	XYLT1	Q86Y38	959 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	NEK11	Q8NG66	645 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	WFIKKN2	Q8TEU8	576 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	UCMA	Q8WVF2	138 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	SORCS1	Q8WY21	1168 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	GATA6	Q92908	595 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	C18orf8	Q96DM3	657 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	LMLN	Q96KR4	655 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	BTN2A3P	Q96KV6	586 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	SPAG5	Q96R06	1193 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	DDX50	Q9BQ39	737 aa	Known RBP	13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	CIPC	Q9C0C6	399 aa		13.79	□□□□□ -0.2
SREBF1-223	ENST00000584760	ABCB8	Q9NUT2	735 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms