RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	E2F8	A0AVK6	867 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063		E5RJQ4	531 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063		H0YCG3	227 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TNPO2	O14787	897 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HBP1	O60381	514 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SMNDC1	O75940	238 aa	Known RBP eCLIP	11.94	□□□□□ -0.5	2e-22	■□□□□ 9.5
CDK5RAP3-231	ENST00000584063	TJP3	O95049	919 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SKI	P12755	728 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	POU3F3	P20264	500 aa	Predicted RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CETN2	P41208	172 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	BPIFB4	P59827	614 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	YWHAG	P61981	247 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RCN2	Q14257	317 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RBM20	Q5T481	1227 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ANO7	Q6IWH7	933 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PLPPR4	Q7Z2D5	763 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZER1	Q7Z7L7	766 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ALYREF	Q86V81	257 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC25A41	Q8N5S1	370 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	WDR60	Q8WVS4	1066 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TIFA	Q96CG3	184 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CPB2	Q96IY4	423 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HERC2P3	Q9BVR0	1158 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CADM1	Q9BY67	442 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SMYD3	Q9H7B4	428 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FLRT1	Q9NZU1	646 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RABGEF1	Q9UJ41	708 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	STARD13	Q9Y3M8	1113 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	EVPL	Q92817	2033 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TRAV6	A0A075B6T7	132 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	hCG_1818297	A0A087WSY0	165 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CYB561D2	O14569	222 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TYROBP	O43914	113 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RNGTT	O60942	597 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SEC24D	O94855	1032 aa	Predicted RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NFIC	P08651	508 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HOXC6	P09630	235 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	LINGO3	P0C6S8	592 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UBL4A	P11441	157 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PSMA2	P25787	234 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ASPA	P45381	313 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	YARS	P54577	528 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	OXCT1	P55809	520 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	BMPR2	Q13873	1038 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GRB14	Q14449	540 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MXD4	Q14582	209 aa	Predicted RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	KIZ	Q2M2Z5	673 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	HSP90AA5P	Q58FG0	334 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZNF600	Q6ZNG1	722 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CLNK	Q7Z7G1	428 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RASAL3	Q86YV0	1011 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MAB21L3	Q8N8X9	362 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	STK32A	Q8WU08	396 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CPT1B	Q92523	772 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GIMAP5	Q96F15	307 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SERAC1	Q96JX3	654 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NR1H4	Q96RI1	486 aa	Predicted RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CPXM1	Q96SM3	734 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SHCBP1L	Q9BZQ2	653 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	LRMDA	Q9H2I8	198 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ABHD16B	Q9H3Z7	469 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NRDE2	Q9H7Z3	1164 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	VTA1	Q9NP79	307 aa		11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.94	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ABLIM1	O14639	778 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UGT1A9	O60656	530 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	APBB3	O95704	486 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	F7	P08709	466 aa	Predicted RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RPL22	P35268	128 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	VCP	P55072	806 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SLC8A3	P57103	927 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	C1QBP	Q07021	282 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CBX3	Q13185	183 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ITGA7	Q13683	1181 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ZNF699	Q32M78	642 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UBA3	Q8TBC4	463 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	ACO2	Q99798	780 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CCT7	Q99832	543 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MRPL4	Q9BYD3	311 aa	Known RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	XYLT2	Q9H1B5	865 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UGT1A7	Q9HAW7	530 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UGT1A10	Q9HAW8	530 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	UGT1A8	Q9HAW9	530 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CNTN3	Q9P232	1028 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	MORF4L1	Q9UBU8	362 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	RASGRP1	O95267	797 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GUCA1C	O95843	209 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GNAZ	P19086	355 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	NFKBIA	P25963	317 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	GMPR	P36959	345 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CDKN2B	P42772	138 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	FAAP100	Q0VG06	881 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	CRHR2	Q13324	411 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TRPC3	Q13507	836 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	SEMA3A	Q14563	771 aa		11.93	□□□□□ -0.5
CDK5RAP3-231	ENST00000584063	TFDP3	Q5H9I0	405 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms