RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ATXN1P54253 815 aaKnown RBP16.05■□□□□ 0.16
SS18-216ENST00000580751 AIF1P55008 147 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 VCPP55072 806 aaKnown RBP16.05■□□□□ 0.16
SS18-216ENST00000580751 ZNF252P-AS1Q0IIN9 211 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 MPPE1Q53F39 396 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 FAM133BQ5BKY9 247 aaKnown RBP16.05■□□□□ 0.16
SS18-216ENST00000580751 NADSYN1Q6IA69 706 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 TPGS1Q6ZTW0 290 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 CHSY1Q86X52 802 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 NTAN1Q96AB6 310 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 WDR24Q96S15 920 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 BBS2Q9BXC9 721 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 TRIM7Q9C029 511 aa16.05■□□□□ 0.16
SS18-216ENST00000580751 XPO7Q9UIA9 1087 aaKnown RBP16.05■□□□□ 0.16
SS18-216ENST00000580751 KRBA1A5PL33 1030 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 NEDD8-MDP1E9PL57 170 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 F5H5T6 163 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 GFRA2O00451 464 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 CES2O00748 559 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 PENKP01210 267 aaPredicted RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 TACR2P21452 398 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 EIF2DP41214 584 aaKnown RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 SOX9P48436 509 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 STARD6P59095 220 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 MS4A13Q5J8X5 152 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 DNTTIP2Q5QJE6 756 aaKnown RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 MPP7Q5T2T1 576 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 IER5LQ5T953 404 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 MEI1Q5TIA1 1274 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 PIK3R6Q5UE93 754 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 LRRC38Q5VT99 294 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 PAPD7Q5XG87 772 aaKnown RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 RAP1GAP2Q684P5 730 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 ZNF852Q6ZMS4 543 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 PEX26Q7Z412 305 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 HJURPQ8NCD3 748 aaPredicted RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 DDI1Q8WTU0 396 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 XPO6Q96QU8 1125 aaKnown RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 HAPLN3Q96S86 360 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 AMFRQ9UKV5 643 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 MRPS17Q9Y2R5 130 aaKnown RBP16.04■□□□□ 0.16
SS18-216ENST00000580751 ALG6Q9Y672 507 aa16.04■□□□□ 0.16
SS18-216ENST00000580751 GOLGA6L7A0A1B0GV03 622 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 TMEM221A6NGB7 291 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 M0R296 226 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 CACNG3O60359 315 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 TYRP14679 529 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 TCP1P17987 556 aaKnown RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 SLC6A4P31645 630 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 ADRA1BP35368 520 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 PCK1P35558 622 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 SCAPQ12770 1279 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 MESDQ14696 234 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 PREPLQ4J6C6 727 aaPredicted RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 RAB6CQ53S08 254 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 RABGAP1LQ5R372 815 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 TTC39BQ5VTQ0 682 aaPredicted RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 FYB2Q5VWT5 728 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 SCYL2Q6P3W7 929 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 RFWD3Q6PCD5 774 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 NT5DC3Q86UY8 548 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 SUGP1Q8IWZ8 645 aaKnown RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 FAM3CQ92520 227 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 TMA16Q96EY4 203 aaKnown RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 C1orf74Q96LT6 269 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 PRMT1Q99873 361 aaKnown RBP16.03■□□□□ 0.16
SS18-216ENST00000580751 RAB6CQ9H0N0 254 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 MFSD1Q9H3U5 465 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 ANLNQ9NQW6 1124 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 RNF14Q9UBS8 474 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.03■□□□□ 0.16
SS18-216ENST00000580751 HS3ST4Q9Y661 456 aa16.03■□□□□ 0.16
SS18-216ENST00000580751 CCDC66A2RUB6 948 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 I6L893 689 aaPredicted RBP16.02■□□□□ 0.16
SS18-216ENST00000580751 TRDMT1O14717 391 aaKnown RBP16.02■□□□□ 0.16
SS18-216ENST00000580751 PRPSAP2O60256 369 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 TSPAN3O60637 253 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 LRCH4O75427 683 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 CTNNA2P26232 953 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 AUHQ13825 339 aaKnown RBP16.02■□□□□ 0.16
SS18-216ENST00000580751 RPS6KA1Q15418 735 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 GAB4Q2WGN9 574 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 EFHC2Q5JST6 749 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 TXNDC11Q6PKC3 985 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 LRRC31Q6UY01 552 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 ETFBKMTQ8IXQ9 262 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 LGI2Q8N0V4 545 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 CCDC185Q8N715 623 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 ZNF557Q8N988 423 aaPredicted RBP16.02■□□□□ 0.16
SS18-216ENST00000580751 BHMTQ93088 406 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 CHFRQ96EP1 664 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 HES6Q96HZ4 224 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 PRICKLE1Q96MT3 831 aaPredicted RBP16.02■□□□□ 0.16
SS18-216ENST00000580751 NELL2Q99435 816 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 P2RY13Q9BPV8 354 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 SIK2Q9H0K1 926 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 TBC1D17Q9HA65 648 aa16.02■□□□□ 0.16
SS18-216ENST00000580751 ZDBF2Q9HCK1 2354 aa16.01■□□□□ 0.15
SS18-216ENST00000580751 MYOFQ9NZM1 2061 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms