RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 MMRN1Q13201 1228 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 NOMO1Q15155 1222 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 ZNF697Q5TEC3 545 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 PIK3R6Q5UE93 754 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CES5AQ6NT32 575 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 TMCO3Q6UWJ1 677 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 Q6ZNB5 142 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 ZNF683Q8IZ20 524 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 ZDHHC14Q8IZN3 488 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 PYROXD2Q8N2H3 581 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CPXM2Q8N436 756 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 SLC35B2Q8TB61 432 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 HERPUD2Q9BSE4 406 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 ZYG11BQ9C0D3 744 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 TTYH1Q9H313 450 aaPredicted RBP15.76■□□□□ 0.11
SS18-215ENST00000580642 SMARCAL1Q9NZC9 954 aa15.76■□□□□ 0.11
SS18-215ENST00000580642 CFAP69A5D8W1 941 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 F5H5T6 163 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 FAM72CH0Y354 149 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 MCF2LO15068 1137 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 MOCS2O96007 188 aaPredicted RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 ERCC2P18074 760 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 MCM3P25205 808 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 STIP1P31948 543 aaKnown RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 CHKAP35790 457 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 KCNQ1P51787 676 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 VCPP55072 806 aaKnown RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 ADCY2Q08462 1091 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 BYSLQ13895 437 aaKnown RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 TEAD2Q15562 447 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 RABGAP1LQ5R372 815 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 ATAT1Q5SQI0 421 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 FAM72AQ5TYM5 149 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 NCBP2-AS2Q69YL0 99 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 FAM72DQ6L9T8 149 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 C8orf74Q6P047 294 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 TMC5Q6UXY8 1006 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 FAM72BQ86X60 149 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 RTL3Q8N8U3 475 aaKnown RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 CCHCR1Q8TD31 782 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 OTUB2Q96DC9 234 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 RIPOR3Q96MK2 946 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 FERMT1Q9BQL6 677 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 SIK2Q9H0K1 926 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 PRDM12Q9H4Q4 367 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 IGFLR1Q9H665 355 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 TDP1Q9NUW8 608 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 OBP2AQ9NY56 170 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 CHD7Q9P2D1 2997 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 AGO1Q9UL18 857 aaKnown RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 NEU3Q9UQ49 428 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 NR2E1Q9Y466 385 aa15.75■□□□□ 0.11
SS18-215ENST00000580642 ZFP37Q9Y6Q3 630 aaPredicted RBP15.75■□□□□ 0.11
SS18-215ENST00000580642 GREM1O60565 184 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 GAS8O95995 478 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 KLKB1P03952 638 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 HMBSP08397 361 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 TACR2P21452 398 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 AMPD1P23109 780 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 FSHRP23945 695 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 MAPKAPK2P49137 400 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 NDST2P52849 883 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 OTUD4Q01804 1114 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 C2orf54Q08AI8 447 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 GRIN2CQ14957 1233 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 PDK1Q15118 436 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 OASLQ15646 514 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 SLC5A9Q2M3M2 681 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 MPP7Q5T2T1 576 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 FBXL22Q6P050 247 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 SYCE2Q6PIF2 218 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 CCDC137Q6PK04 289 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 CHST9Q7L1S5 443 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 CHSY1Q86X52 802 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 DENND1CQ8IV53 801 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 GPR161Q8N6U8 529 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 NOA1Q8NC60 698 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 ACTL9Q8TC94 416 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 ADAMTS19Q8TE59 1207 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 E2F7Q96AV8 911 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 PABPC5Q96DU9 382 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 TCEAL4Q96EI5 215 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 NECTIN4Q96NY8 510 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 SLC22A12Q96S37 553 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 CYP2S1Q96SQ9 504 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 KRT12Q99456 494 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 GAS2L1Q99501 681 aaPredicted RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 DDX47Q9H0S4 455 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 TRPV4Q9HBA0 871 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 TMPRSS4Q9NRS4 437 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 GKN1Q9NS71 199 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 TMEM248Q9NWD8 314 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 TBC1D14Q9P2M4 693 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 SH3BP1Q9Y3L3 701 aa15.74■□□□□ 0.11
SS18-215ENST00000580642 TNRC18O15417 2968 aaPredicted RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 LAMA2P24043 3122 aaKnown RBP15.74■□□□□ 0.11
SS18-215ENST00000580642 BCLAF3A2AJT9 711 aaKnown RBP15.73■□□□□ 0.11
SS18-215ENST00000580642 LEFTY2O00292 366 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 GFRA2O00451 464 aa15.73■□□□□ 0.11
SS18-215ENST00000580642 SLC9A3R1O14745 358 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms