RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 DDX3YO15523 660 aaKnown RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 PSTPIP1O43586 416 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 APBB3O95704 486 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 FGGP02679 453 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 PDGFRBP09619 1106 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 ATF6P18850 670 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 DRD1P21728 446 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 PCSK1P29120 753 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 GPD2P43304 727 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 ACADSBP45954 432 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 GPR15P49685 360 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 BCAT1P54687 386 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 RNASE9P60153 205 aaKnown RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 BST2Q10589 180 aaKnown RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 PTP4A2Q12974 167 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 DMC1Q14565 340 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 NAA30Q147X3 362 aaPredicted RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 BRD3Q15059 726 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 HADHQ16836 314 aaKnown RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 C2CD6Q53TS8 623 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 SDHAF4Q5VUM1 108 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 KIAA1211LQ6NV74 962 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 LRRTM3Q86VH5 581 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 WDTC1Q8N5D0 677 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 ANKRD52Q8NB46 1076 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 CCDC26Q8TAB7 109 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 UBA3Q8TBC4 463 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 MRPS31Q92665 395 aaKnown RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 USP13Q92995 863 aaPredicted RBP10.58□□□□□ -0.72
SS18-210ENST00000578700 MS4A14Q96JA4 679 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 NCAPGQ9BPX3 1015 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 MED10Q9BTT4 135 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 ZCWPW1Q9H0M4 648 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 TRPC7Q9HCX4 862 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 FAM49BQ9NUQ9 324 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 TDP1Q9NUW8 608 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 KIAA1549LQ6ZVL6 1849 aa10.58□□□□□ -0.72
SS18-210ENST00000578700 PATE3B3GLJ2 98 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 PDE2AO00408 941 aaPredicted RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 RNF8O76064 485 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 HAPLN1P10915 354 aaPredicted RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 PSMA2P25787 234 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ADORA2BP29275 332 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 WEE1P30291 646 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 GJA4P35212 333 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 GABRB2P47870 512 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 SEC13P55735 322 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 GSCP56915 257 aaPredicted RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 ACAP1Q15027 740 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 PTPN20Q4JDL3 420 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 USP39Q53GS9 565 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 PPP1R26Q5T8A7 1209 aaPredicted RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 FAM102AQ5T9C2 384 aaPredicted RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 OR6B2Q6IFH4 312 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 LIMS2Q7Z4I7 341 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 MAATS1Q7Z4T9 603 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 CCDC50Q8IVM0 306 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 C12orf29Q8N999 325 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 NOA1Q8NC60 698 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 B3GALNT2Q8NCR0 500 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 DEFB124Q8NES8 71 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 RIN3Q8TB24 985 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 KBTBD7Q8WVZ9 684 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 PIGKQ92643 395 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 CD101Q93033 1021 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 EXOC4Q96A65 974 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 RBM41Q96IZ5 413 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 BTBD6Q96KE9 485 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 RUNDC3BQ96NL0 473 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 CPXM1Q96SM3 734 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 SCNM1Q9BWG6 230 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 PARD6BQ9BYG5 372 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ADAM33Q9BZ11 813 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ECT2Q9H8V3 914 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ARFGAP3Q9NP61 516 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 TMEM9BQ9NQ34 198 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 CYLDQ9NQC7 956 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ASNSD1Q9NWL6 643 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 DUS2Q9NX74 493 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 DDX43Q9NXZ2 648 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 DDX56Q9NY93 547 aaKnown RBP10.57□□□□□ -0.72
SS18-210ENST00000578700 THADAQ6YHU6 1953 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 PI4KAP42356 2102 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 ABCA7Q8IZY2 2146 aa10.57□□□□□ -0.72
SS18-210ENST00000578700 TSC2P49815 1807 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 LNP1A1A4G5 178 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 CCDC151A5D8V7 595 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 ZRANB2O95218 330 aaKnown RBP eCLIP10.56□□□□□ -0.72
SS18-210ENST00000578700 F11P03951 625 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 ERBB2P04626 1255 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 KRT7P08729 469 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 PTPN1P18031 435 aaKnown RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 IFNAR2P48551 515 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 DHPSP49366 369 aaPredicted RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 PEX5P50542 639 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 IRX4P78413 519 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 PDGFRLQ15198 375 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 MAPRE1Q15691 268 aaKnown RBP10.56□□□□□ -0.72
SS18-210ENST00000578700 FBXO43Q4G163 708 aa10.56□□□□□ -0.72
SS18-210ENST00000578700 C2orf27AQ580R0 203 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms