RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 NPY6RQ99463 290 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 NUP58Q9BVL2 599 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 SIK2Q9H0K1 926 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 WDCPQ9H6R7 721 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 PIGVQ9NUD9 493 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 FBXO10Q9UK96 956 aa20.18■□□□□ 0.82
SS18-209ENST00000578595 NYNRINQ9P2P1 1898 aaKnown RBP20.18■□□□□ 0.82
SS18-209ENST00000578595 ABCA7Q8IZY2 2146 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 VPS13AQ96RL7 3174 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 ANKRD62A6NC57 917 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 CBFA2T2O43439 604 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 ADAM23O75077 832 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 GJB6O95452 261 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 F9P00740 461 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 PABPC1P11940 636 aaKnown RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 HLA-FP30511 346 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 HOXA6P31267 233 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 HOXD11P31277 338 aaPredicted RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 SDC4P31431 198 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 CNR2P34972 360 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 DNAJC24Q6P3W2 148 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 CIR1Q86X95 450 aaPredicted RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 ZNF557Q8N988 423 aaPredicted RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 WFDC5Q8TCV5 224 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 SORCS1Q8WY21 1168 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 MYEOVQ96EZ4 313 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 RPRD1AQ96P16 312 aaPredicted RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 XPO4Q9C0E2 1151 aaKnown RBP20.17■□□□□ 0.82
SS18-209ENST00000578595 EPC1Q9H2F5 836 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 HAUS4Q9H6D7 363 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 INVSQ9Y283 1065 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 STARD13Q9Y3M8 1113 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 RAD54BQ9Y620 910 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 GPR179Q6PRD1 2367 aa20.17■□□□□ 0.82
SS18-209ENST00000578595 NUP205Q92621 2012 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 PAGE1O75459 146 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 HNRNPLP14866 589 aaKnown RBP eCLIP20.16■□□□□ 0.821e-9■■■■■ 30.1
SS18-209ENST00000578595 STARD3Q14849 445 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 EIF4HQ15056 248 aaKnown RBP20.16■□□□□ 0.82
SS18-209ENST00000578595 E2F5Q15329 346 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 SLC25A52Q3SY17 297 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 FNDC3BQ53EP0 1204 aaKnown RBP20.16■□□□□ 0.82
SS18-209ENST00000578595 MPP7Q5T2T1 576 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 OTUD1Q5VV17 481 aaPredicted RBP20.16■□□□□ 0.82
SS18-209ENST00000578595 E4F1Q66K89 784 aaPredicted RBP20.16■□□□□ 0.82
SS18-209ENST00000578595 IRF2BP2Q7Z5L9 587 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 AHI1Q8N157 1196 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 MDGA1Q8NFP4 955 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 RXFP2Q8WXD0 754 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 IRX2Q9BZI1 471 aaPredicted RBP20.16■□□□□ 0.82
SS18-209ENST00000578595 TKTL2Q9H0I9 626 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 ELOVL2Q9NXB9 296 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 GMEB2Q9UKD1 530 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 VANGL2Q9ULK5 521 aa20.16■□□□□ 0.82
SS18-209ENST00000578595 PLXND1Q9Y4D7 1925 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 CCDC163A0A0D9SF12 145 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 GFRA2O00451 464 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 HRO43593 1189 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 LUC7L3O95232 432 aaKnown RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 KRT3P12035 628 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 SKILP12757 684 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 PDGFRAP16234 1089 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 POLR2EP19388 210 aaKnown RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 CD70P32970 193 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 RDXP35241 583 aaKnown RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 NUMBP49757 651 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 ATXN1P54253 815 aaKnown RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 MTA1Q13330 715 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 USP39Q53GS9 565 aaKnown RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 BRMS1LQ5PSV4 323 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 ACAD10Q6JQN1 1059 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 SERPINA13PQ6UXR4 307 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 MON1BQ7L1V2 547 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 FAM131BQ86XD5 332 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 PHF13Q86YI8 300 aaPredicted RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 JOSD2Q8TAC2 188 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 CYB5D2Q8WUJ1 264 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 GAB3Q8WWW8 586 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 EDEM3Q9BZQ6 932 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 TTYH3Q9C0H2 523 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 CALCOCO1Q9P1Z2 691 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 TMEM59LQ9UK28 342 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 HCN2Q9UL51 889 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 STON1Q9Y6Q2 735 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 MUC22E2RYF6 1773 aaPredicted RBP20.15■□□□□ 0.82
SS18-209ENST00000578595 GVINP1Q7Z2Y8 2422 aa20.15■□□□□ 0.82
SS18-209ENST00000578595 WASH3PC4AMC7 463 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 SYNCRIPO60506 623 aaKnown RBP20.14■□□□□ 0.81
SS18-209ENST00000578595 MOCS3O95396 460 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 ADCY5O95622 1261 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 C1QBPQ07021 282 aaKnown RBP20.14■□□□□ 0.81
SS18-209ENST00000578595 LMAN2Q12907 356 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 ZNF234Q14588 700 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 C15orf59Q2T9L4 293 aaPredicted RBP20.14■□□□□ 0.81
SS18-209ENST00000578595 FIGNQ5HY92 759 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 MBLAC2Q68D91 279 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 TRNP1Q6NT89 227 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.14■□□□□ 0.81
SS18-209ENST00000578595 ADAM33Q9BZ11 813 aa20.14■□□□□ 0.81
SS18-209ENST00000578595 AIPL1Q9NZN9 384 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms