RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LMLNQ96KR4 655 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 ZSWIM1Q9BR11 485 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 BTBD1Q9H0C5 482 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 SUN2Q9UH99 717 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS53-216ENST00000574029 LHX6Q9UPM6 363 aa21.92■■□□□ 1.1
VPS53-216ENST00000574029 NUMA1Q14980 2115 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 GOLGA6L7A0A1B0GV03 622 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 PMM2O15305 246 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 FLRT2O43155 660 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 TBL1XO60907 577 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 DKK1O94907 266 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 SEMA4FO95754 770 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 DNTTP04053 509 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 HOXB3P14651 431 aaPredicted RBP21.91■■□□□ 1.1
VPS53-216ENST00000574029 POLR2EP19388 210 aaKnown RBP21.91■■□□□ 1.1
VPS53-216ENST00000574029 SLC11A2P49281 568 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 FMO5P49326 533 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 RGS7P49802 495 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 KIF19Q2TAC6 998 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 NUGGCQ68CJ6 796 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 ZNF557Q8N988 423 aaPredicted RBP21.91■■□□□ 1.1
VPS53-216ENST00000574029 BIRC7Q96CA5 298 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 METTL14Q9HCE5 456 aaKnown RBP21.91■■□□□ 1.1
VPS53-216ENST00000574029 TM9SF3Q9HD45 589 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 TOR4AQ9NXH8 423 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 SNX11Q9Y5W9 270 aa21.91■■□□□ 1.1
VPS53-216ENST00000574029 RNF225M0QZC1 329 aaPredicted RBP21.9■■□□□ 1.1
VPS53-216ENST00000574029 PIK3R2O00459 728 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 ACSL4O60488 711 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 LTFP02788 710 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 GRIA4P48058 902 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 TBX4P57082 545 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 TEAD4Q15561 434 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 RHBDD1Q8TEB9 315 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 GOLGA1Q92805 767 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 MYO19Q96H55 970 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 HSFY1Q96LI6 401 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 NT5C1BQ96P26 610 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 CDC6Q99741 560 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 GTPBP4Q9BZE4 634 aaKnown RBP21.9■■□□□ 1.1
VPS53-216ENST00000574029 SGK2Q9HBY8 427 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 ANKRD6Q9Y2G4 727 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 PCDHB4Q9Y5E5 795 aa21.9■■□□□ 1.1
VPS53-216ENST00000574029 PKD1L2Q7Z442 2459 aa21.89■■□□□ 1.1
VPS53-216ENST00000574029 SMC2O95347 1197 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 CD27P26842 260 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 SUZ12Q15022 739 aaKnown RBP21.89■■□□□ 1.09
VPS53-216ENST00000574029 STILQ15468 1287 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 TTC31Q49AM3 519 aaPredicted RBP21.89■■□□□ 1.09
VPS53-216ENST00000574029 ZNF776Q68DI1 518 aaPredicted RBP21.89■■□□□ 1.09
VPS53-216ENST00000574029 NADSYN1Q6IA69 706 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 ENGASEQ8NFI3 743 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 FIBINQ8TAL6 211 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 CLEC4CQ8WTT0 213 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 SMARCE1Q969G3 411 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 TTC17Q96AE7 1141 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 RSPH9Q9H1X1 276 aaPredicted RBP21.89■■□□□ 1.09
VPS53-216ENST00000574029 ATRXP46100 2492 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 DMXL2Q8TDJ6 3036 aa21.89■■□□□ 1.09
VPS53-216ENST00000574029 M0QYV0 167 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 FBXO21O94952 628 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 ATXN1LP0C7T5 689 aaKnown RBP21.88■■□□□ 1.09
VPS53-216ENST00000574029 TMPRSS7Q7RTY8 843 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 MFN1Q8IWA4 741 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 HJURPQ8NCD3 748 aaPredicted RBP21.88■■□□□ 1.09
VPS53-216ENST00000574029 LMO3Q8TAP4 145 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 ERCC4Q92889 916 aaPredicted RBP21.88■■□□□ 1.09
VPS53-216ENST00000574029 KAT5Q92993 513 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 PRICKLE1Q96MT3 831 aaPredicted RBP21.88■■□□□ 1.09
VPS53-216ENST00000574029 ORAI3Q9BRQ5 295 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 CCDC86Q9H6F5 360 aaKnown RBP21.88■■□□□ 1.09
VPS53-216ENST00000574029 SCML1Q9UN30 329 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 BTBD3Q9Y2F9 522 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 ADAMTS20P59510 1910 aa21.88■■□□□ 1.09
VPS53-216ENST00000574029 FSBPO95073 299 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 FYNP06241 537 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 BRD2P25440 801 aaKnown RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 USP30Q70CQ3 517 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 PPM1KQ8N3J5 372 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 IGSF8Q969P0 613 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 MYEOVQ96EZ4 313 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 DHTKD1Q96HY7 919 aaPredicted RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 FCRL2Q96LA5 508 aaPredicted RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 CEP63Q96MT8 703 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 DDX50Q9BQ39 737 aaKnown RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 MTG2Q9H4K7 406 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 STIM2Q9P246 746 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 INTS6Q9UL03 887 aaKnown RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 GPSM3Q9Y4H4 160 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 PLXNA2O75051 1894 aa21.87■■□□□ 1.09
VPS53-216ENST00000574029 TP53BP1Q12888 1972 aaPredicted RBP21.87■■□□□ 1.09
VPS53-216ENST00000574029 PSMA7O14818 248 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 P4HA2O15460 535 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 PCDHGA12O60330 932 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 CALCAP01258 141 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 ASLP04424 464 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 IGHV4-34P06331 123 aa21.86■■□□□ 1.09
VPS53-216ENST00000574029 RPL34P49207 117 aaKnown RBP21.86■■□□□ 1.09
VPS53-216ENST00000574029 NNTQ13423 1086 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms