RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 STK10O94804 968 aaKnown RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 PRKCGP05129 697 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 NOS2P35228 1153 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 NAB1Q13506 487 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 HIC1Q14526 733 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PAFAH1B3Q15102 231 aaKnown RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 UBXN11Q5T124 520 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 TEDDM1Q5T9Z0 273 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 TRIM68Q6AZZ1 485 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 IQSEC1Q6DN90 963 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 USP50Q70EL3 339 aaPredicted RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 ZNF567Q8N184 647 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 DNAJC9Q8WXX5 260 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 ABHD16BQ9H3Z7 469 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PRDM12Q9H4Q4 367 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SYBUQ9NX95 663 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SUFUQ9UMX1 484 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SEC23IPQ9Y6Y8 1000 aaKnown RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 NRCAMQ92823 1304 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PCNTO95613 3336 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 SERPINA6P08185 405 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 CYP2C9P11712 490 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 AXLP30530 894 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 NDUFV1P49821 464 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 RPL10AP62906 217 aaKnown RBP23.41■■□□□ 1.34
VPS53-211ENST00000571805 PDK1Q15118 436 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 MDH1BQ5I0G3 518 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 PAQR9Q6ZVX9 377 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 TP53INP2Q8IXH6 220 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ARHGAP24Q8N264 748 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ZNF333Q96JL9 665 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 TINF2Q9BSI4 451 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 NAT9Q9BTE0 207 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 PIN4Q9Y237 131 aaKnown RBP23.41■■□□□ 1.34
VPS53-211ENST00000571805 TSC2P49815 1807 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 CLDN5O00501 218 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 HUS1O60921 280 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 TBX10O75333 385 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 LYPLA1O75608 230 aaPredicted RBP23.41■■□□□ 1.34
VPS53-211ENST00000571805 CAPN15O75808 1086 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ITGA2BP08514 1039 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ACADSP16219 412 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 WARSP23381 471 aaKnown RBP23.41■■□□□ 1.34
VPS53-211ENST00000571805 VHLP40337 213 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ALDH18A1P54886 795 aaKnown RBP23.41■■□□□ 1.34
VPS53-211ENST00000571805 LILRA4P59901 499 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 TUBB3Q13509 450 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 DPYSQ14117 519 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 SV2CQ496J9 727 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 SYPL2Q5VXT5 272 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 ANO7Q6IWH7 933 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 GPR142Q7Z601 462 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 CCNYQ8ND76 341 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 NMRK1Q9NWW6 199 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 IGSF9Q9P2J2 1179 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 DCDC2Q9UHG0 476 aa23.41■■□□□ 1.34
VPS53-211ENST00000571805 SYNJ2BP-COX16A0A087WUM0 186 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 BTBD19C9JJ37 291 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SESN3P58005 492 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SLC34A1Q06495 639 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 GRB14Q14449 540 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 TBCCQ15814 346 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 CCDC6Q16204 474 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SNX30Q5VWJ9 437 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 BSPRYQ5W0U4 402 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 RILPQ96NA2 401 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 COX16Q9P0S2 106 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SEPT10Q9P0V9 454 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 STX18Q9P2W9 335 aaKnown RBP23.4■■□□□ 1.34
VPS53-211ENST00000571805 PRR5-ARHGAP8B1AHC4 643 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 M0QYT0 321 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 CAPN9O14815 690 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 XPOTO43592 962 aaKnown RBP23.4■■□□□ 1.34
VPS53-211ENST00000571805 CREB3O43889 395 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 KIF1CO43896 1103 aaKnown RBP23.4■■□□□ 1.34
VPS53-211ENST00000571805 ARHGAP8P85298 464 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 KDSRQ06136 332 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 PCLAFQ15004 111 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 ATG14Q6ZNE5 492 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 PPP1R14CQ8TAE6 165 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 PIWIL2Q8TC59 973 aaKnown RBP23.4■■□□□ 1.34
VPS53-211ENST00000571805 MS4A4AQ96JQ5 239 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SLC2A13Q96QE2 648 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SIKE1Q9BRV8 207 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 DNAI2Q9GZS0 605 aa23.4■■□□□ 1.34
VPS53-211ENST00000571805 SPECC1L-ADORA2AF8WAN1 911 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 DCLK1O15075 740 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 NVLO15381 856 aaKnown RBP23.39■■□□□ 1.33
VPS53-211ENST00000571805 F2P00734 622 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 KCNA4P22459 653 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 SLC1A6P48664 564 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 THOC5Q13769 683 aaKnown RBP23.39■■□□□ 1.33
VPS53-211ENST00000571805 RCN2Q14257 317 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 SNX17Q15036 470 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 TSNAXIP1Q2TAA8 658 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 DNAJB3Q8WWF6 145 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 KCTD13Q8WZ19 329 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 PGBD4Q96DM1 585 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 TSPAN18Q96SJ8 248 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 PIGVQ9NUD9 493 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms