RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ATP5DP30049 168 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 OR1D2P34982 312 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 PMS2P54278 862 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 CACNA2D1P54289 1103 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 EPHB3P54753 998 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ARPP19P56211 112 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TPI1P60174 286 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 DYNLT1P63172 113 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 DHX9Q08211 1270 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 DUSP4Q13115 394 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 DDR2Q16832 855 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 SLC45A4Q5BKX6 768 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ZC3H12AQ5D1E8 599 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 DAB2IPQ5VWQ8 1189 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 DENND2CQ68D51 928 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 HEATR6Q6AI08 1181 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 HIBCHQ6NVY1 386 aaPredicted RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 CCDC149Q6ZUS6 474 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 RFX8Q6ZV50 586 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 CENPUQ71F23 418 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 BHLHA9Q7RTU4 235 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GPRIN1Q7Z2K8 1008 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRIM46Q7Z4K8 759 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TCEAL8Q8IYN2 117 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ZCCHC9Q8N567 271 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 ATAD1Q8NBU5 361 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 FBXO25Q8TCJ0 367 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TFB1MQ8WVM0 346 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 ATG4AQ8WYN0 398 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 HERVK_113Q902F9 699 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 CLP1Q92989 425 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 FBXO32Q969P5 355 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRMT2BQ96GJ1 504 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 MYRFLQ96LU7 910 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 SEPT5Q99719 369 aaPredicted RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRIM51Q9BSJ1 452 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRIM31Q9BZY9 425 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 WDR6Q9NNW5 1121 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 PIGVQ9NUD9 493 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 KLHL11Q9NVR0 708 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GOLGA6AQ9NYA3 693 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 GRHL1Q9NZI5 618 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRPM5Q9NZQ8 1165 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 CWC15Q9P013 229 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 PPARGC1AQ9UBK2 798 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 OR12D3Q9UGF7 316 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 ZMYM5Q9UJ78 669 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 TRHDEQ9UKU6 1024 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 HPCAL4Q9UM19 191 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 R3HDM2Q9Y2K5 976 aaKnown RBP8.23□□□□□ -1.09
VPS39-213ENST00000570062 SLC4A7Q9Y6M7 1214 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 FRMPD3Q5JV73 1810 aa8.23□□□□□ -1.09
VPS39-213ENST00000570062 MYH10P35580 1976 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 SLC38A8A6NNN8 435 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ZBBXA8MT70 800 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 WASH4PA8MWX3 477 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 NT5C1B-RDH14C9J2C7 533 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 F8W810 466 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 CHADO15335 359 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 OPHN1O60890 802 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 SPAG6O75602 509 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 LATS1O95835 1130 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 IFNB1P01574 187 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ADH1AP07327 375 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 CD48P09326 243 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 NUDT17P0C025 328 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 OR4Q2P0C623 313 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 MYZAPP0CAP1 466 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 MYBL2P10244 700 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 CTSAP10619 480 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ECHS1P30084 290 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 PHBP35232 272 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ATP5C1P36542 298 aaKnown RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 FDFT1P37268 417 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 GATMP50440 423 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ITGA8P53708 1063 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 MLLT6P55198 1093 aaPredicted RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 ARL4CP56559 192 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TBX4P57082 545 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 IFFO1Q0D2I5 559 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TAF10Q12962 218 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 GPS1Q13098 491 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 SEMA3BQ13214 749 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 DPYSQ14117 519 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TRIP4Q15650 581 aaPredicted RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 PTPRNQ16849 979 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TCTN1Q2MV58 587 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 C6orf118Q5T5N4 469 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TMCO4Q5TGY1 634 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 IZUMO3Q5VZ72 239 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ARMC3Q5W041 872 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TIGD7Q6NT04 549 aaPredicted RBP8.22□□□□□ -1.09
VPS39-213ENST00000570062 RHBDF2Q6PJF5 856 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 HFE2Q6ZVN8 426 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TMC3Q7Z5M5 1100 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 SCD5Q86SK9 330 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 TAC4Q86UU9 113 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 CCNJLQ8IV13 435 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 PDIK1LQ8N165 341 aa8.22□□□□□ -1.09
VPS39-213ENST00000570062 ARFGAP2Q8N6H7 521 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms