RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GABRG2P18507 467 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 GBP1P32455 592 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 MATKP42679 507 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 SPEM2Q0P670 501 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 OTUD1Q5VV17 481 aaPredicted RBP15.58■□□□□ 0.08
VPS39-210ENST00000568357 RAP1GAP2Q684P5 730 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 SDE2Q6IQ49 451 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 KIAA0907Q7Z7F0 614 aaPredicted RBP15.58■□□□□ 0.08
VPS39-210ENST00000568357 ADIPOR2Q86V24 386 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 LUZP1Q86V48 1076 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 FRMD1Q8N878 549 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 SLC30A5Q8TAD4 765 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 OLIG1Q8TAK6 271 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 RLN3Q8WXF3 142 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 NT5C3BQ969T7 300 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 ZC3H10Q96K80 434 aaKnown RBP15.58■□□□□ 0.08
VPS39-210ENST00000568357 LMLNQ96KR4 655 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 BTN2A3PQ96KV6 586 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 NPY6RQ99463 290 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 DDX50Q9BQ39 737 aaKnown RBP15.58■□□□□ 0.08
VPS39-210ENST00000568357 ABCB8Q9NUT2 735 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.58■□□□□ 0.08
VPS39-210ENST00000568357 GMEB2Q9UKD1 530 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 STON1Q9Y6Q2 735 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 FAM208BQ5VWN6 2430 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 A0A1B0GTH6 734 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 GOLGA8SH3BPF8 625 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 M0QYT0 321 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 RETP07949 1114 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 UNGP13051 313 aaPredicted RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 PTMSP20962 102 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 TACR2P21452 398 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 KCNA4P22459 653 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 MMP8P22894 467 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 CCR1P32246 355 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 CD70P32970 193 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 SCNN1AP37088 669 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 IL12RB1P42701 662 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 NME3Q13232 169 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 ENPP2Q13822 863 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 NR1I3Q14994 352 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 ZSCAN23Q3MJ62 389 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 PLK5Q496M5 336 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 USP39Q53GS9 565 aaKnown RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 FAM102AQ5T9C2 384 aaPredicted RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 TRNP1Q6NT89 227 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 MMS22LQ6ZRQ5 1243 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 PHLDB2Q86SQ0 1253 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 LGI2Q8N0V4 545 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.57■□□□□ 0.08
VPS39-210ENST00000568357 HJURPQ8NCD3 748 aaPredicted RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 FIBINQ8TAL6 211 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 NETO1Q8TDF5 533 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 RNF34Q969K3 372 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 PRMT1Q99873 361 aaKnown RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 CIPCQ9C0C6 399 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 DUSP15Q9H1R2 295 aaPredicted RBP15.57■□□□□ 0.08
VPS39-210ENST00000568357 BCCIPQ9P287 314 aaKnown RBP eCLIP15.57■□□□□ 0.08
VPS39-210ENST00000568357 TMEM59LQ9UK28 342 aa15.57■□□□□ 0.08
VPS39-210ENST00000568357 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.56■□□□□ 0.08
VPS39-210ENST00000568357 SLC2A3P11169 496 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 PABPC1P11940 636 aaKnown RBP15.56■□□□□ 0.08
VPS39-210ENST00000568357 ABCB4P21439 1286 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 BCKDHBP21953 392 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 FLT3P36888 993 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 ZNF234Q14588 700 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 EIF4HQ15056 248 aaKnown RBP15.56■□□□□ 0.08
VPS39-210ENST00000568357 FILIP1LQ4L180 1135 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 FSCBQ5H9T9 825 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 CHST9Q7L1S5 443 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 IRF2BP2Q7Z5L9 587 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 MFN1Q8IWA4 741 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 PGBD3Q8N328 593 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 CARNMT1Q8N4J0 409 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 ATP6V0D2Q8N8Y2 350 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 CYB5D2Q8WUJ1 264 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 UCMAQ8WVF2 138 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 BAP1Q92560 729 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 AGPAT1Q99943 283 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 SLC6A17Q9H1V8 727 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 ANLNQ9NQW6 1124 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 PIGVQ9NUD9 493 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 SLC12A6Q9UHW9 1150 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 GGA2Q9UJY4 613 aa15.56■□□□□ 0.08
VPS39-210ENST00000568357 I6L893 689 aaPredicted RBP15.55■□□□□ 0.08
VPS39-210ENST00000568357 NPC1O15118 1278 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 ADCY5O95622 1261 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 CXCR3P49682 368 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 SULT1E1P49888 294 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 LMAN2Q12907 356 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 PTP4A2Q12974 167 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 ACAP1Q15027 740 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 PTPRNQ16849 979 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 CLEC16AQ2KHT3 1053 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 SKOR2Q2VWA4 1001 aaPredicted RBP15.55■□□□□ 0.08
VPS39-210ENST00000568357 MAP7D1Q3KQU3 841 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 SLC25A52Q3SY17 297 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 MBLAC2Q68D91 279 aa15.55■□□□□ 0.08
VPS39-210ENST00000568357 TRIM72Q6ZMU5 477 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms