RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 GAB1Q13480 694 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 SAFBQ15424 915 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS35-207ENST00000568191 ARHGAP15Q53QZ3 475 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 UBAP2Q5T6F2 1119 aaKnown RBP3.29□□□□□ -1.88
VPS35-207ENST00000568191 CCDC181Q5TID7 509 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 RAP1GAP2Q684P5 730 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 IQCF1Q8N6M8 205 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 ARL14EPQ8N8R7 260 aaPredicted RBP3.29□□□□□ -1.88
VPS35-207ENST00000568191 BRI3BPQ8WY22 251 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 ATP2A3Q93084 1043 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 ZNF566Q969W8 418 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 TIFAQ96CG3 184 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 ELOVL1Q9BW60 279 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 MLXIPLQ9NP71 852 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 PLK2Q9NYY3 685 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 RGL1Q9NZL6 768 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 WNT16Q9UBV4 365 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 NFU1Q9UMS0 254 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 LAMP3Q9UQV4 416 aa3.29□□□□□ -1.88
VPS35-207ENST00000568191 A0A087WZ62 844 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 PARNO95453 639 aaKnown RBP3.28□□□□□ -1.88
VPS35-207ENST00000568191 GLP2RO95838 553 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 KLKB1P03952 638 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 NGFRP08138 427 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 TSHRP16473 764 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 PRIM2P49643 509 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ENTPD1P49961 510 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ZXDBP98169 803 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ASIC2Q16515 512 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ZNF569Q5MCW4 686 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 C10orf76Q5T2E6 689 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 CYB5RLQ6IPT4 315 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ERAP2Q6P179 960 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 ZNF474Q6S9Z5 364 aaPredicted RBP3.28□□□□□ -1.88
VPS35-207ENST00000568191 SLC39A5Q6ZMH5 540 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 PIK3AP1Q6ZUJ8 805 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 IGFN1Q86VF2 1251 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 DDIASQ8IXT1 998 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 PELI3Q8N2H9 469 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 GPR78Q96P69 363 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 TBCBQ99426 244 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 GATA5Q9BWX5 397 aaPredicted RBP3.28□□□□□ -1.88
VPS35-207ENST00000568191 AAMDCQ9H7C9 122 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 AS3MTQ9HBK9 375 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 TM7SF3Q9NS93 570 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 FAM50BQ9Y247 325 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 B3GNT3Q9Y2A9 372 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 LRP12Q9Y561 859 aa3.28□□□□□ -1.88
VPS35-207ENST00000568191 H0YGN5 161 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 J3KTA2 159 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 PODXLO00592 558 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 ACOT8O14734 319 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 NDST3O95803 873 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 IFNA2P01563 188 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 ALDOAP04075 364 aaKnown RBP3.27□□□□□ -1.89
VPS35-207ENST00000568191 NBPF7P0C2Y1 421 aaPredicted RBP3.27□□□□□ -1.89
VPS35-207ENST00000568191 PECAM1P16284 738 aaPredicted RBP3.27□□□□□ -1.89
VPS35-207ENST00000568191 TNFRSF1BP20333 461 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 GABRB3P28472 473 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 STAT1P42224 750 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 EGR4Q05215 589 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 GALNT3Q14435 633 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 ALG10Q5BKT4 473 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 ALG10BQ5I7T1 473 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 CAMK1DQ8IU85 385 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 RNF152Q8N8N0 203 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 OR52N4Q8NGI2 321 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 CTAGE1Q96RT6 745 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 SARGQ9BW04 601 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 ARHGAP39Q9C0H5 1083 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 SLCO5A1Q9H2Y9 848 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 NECTIN3Q9NQS3 549 aa3.27□□□□□ -1.89
VPS35-207ENST00000568191 A0A1W2PPC1 479 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 NKX2-8O15522 239 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ATG13O75143 517 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PPP6R2O75170 966 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 FGF18O76093 207 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 CNTN5O94779 1100 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ITGA5P08648 1049 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 RFPL3SP0C7P2 107 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 CHRNB1P11230 501 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 CPA1P15085 419 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ALDH18A1P54886 795 aaKnown RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 SLC37A1P57057 533 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ROR2Q01974 943 aaKnown RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 TLE3Q04726 772 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PMPCAQ10713 525 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PGM5Q15124 567 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ZNF585BQ52M93 769 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 FAM209BQ5JX69 171 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 ANKRD40Q6AI12 368 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 CAPRIN2Q6IMN6 1127 aaKnown RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 HMBOX1Q6NT76 420 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 HIBCHQ6NVY1 386 aaPredicted RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 PARM1Q6UWI2 310 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 NRSN1Q8IZ57 195 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 FAM185AQ8N0U4 392 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 PAQR4Q8N4S7 273 aaPredicted RBP3.26□□□□□ -1.89
VPS35-207ENST00000568191 GLIS1Q8NBF1 620 aa3.26□□□□□ -1.89
VPS35-207ENST00000568191 B4GALNT2Q8NHY0 566 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 116.4 ms