RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NNTQ13423 1086 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 ZCCHC9Q8N567 271 aaKnown RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 DQX1Q8TE96 717 aaKnown RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 LMLNQ96KR4 655 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 FCRL2Q96LA5 508 aaPredicted RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 SERPINB11Q96P15 392 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 TMEM121BQ9BXQ6 578 aaPredicted RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 INTS2Q9H0H0 1204 aaKnown RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 UBE2TQ9NPD8 197 aaPredicted RBP16.7■□□□□ 0.26
CLN3-229ENST00000567963 PRSS16Q9NQE7 514 aa16.7■□□□□ 0.26
CLN3-229ENST00000567963 BCAT2O15382 392 aaPredicted RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 SART1O43290 800 aaKnown RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 KRT5P13647 590 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 POLR2EP19388 210 aaKnown RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 ACADSBP45954 432 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 HNRNPDQ14103 355 aaKnown RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 DENND1BQ6P3S1 775 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 FAM124AQ86V42 546 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 MFN1Q8IWA4 741 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 ZNF557Q8N988 423 aaPredicted RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 C1orf216Q8TAB5 229 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 FIBINQ8TAL6 211 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 STK32AQ8WU08 396 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 ZNF606Q8WXB4 792 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 FAM149B1Q96BN6 582 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 SLC39A13Q96H72 371 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 DDX50Q9BQ39 737 aaKnown RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 PCED1AQ9H1Q7 454 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 LHX5Q9H2C1 402 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 FBRSQ9HAH7 460 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 STIM2Q9P246 746 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 SUN2Q9UH99 717 aa16.69■□□□□ 0.26
CLN3-229ENST00000567963 EIF2B4Q9UI10 523 aaKnown RBP16.69■□□□□ 0.26
CLN3-229ENST00000567963 MED7O43513 233 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 HYAL3O43820 417 aaPredicted RBP16.68■□□□□ 0.26
CLN3-229ENST00000567963 SH3BP5O60239 455 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 FGFR1OPO95684 399 aaKnown RBP16.68■□□□□ 0.26
CLN3-229ENST00000567963 ACSL1P33121 698 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 ZBTB16Q05516 673 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 MEA1Q16626 185 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 SYPL2Q5VXT5 272 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 BEND5Q7L4P6 421 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 KDF1Q8NAX2 398 aaPredicted RBP16.68■□□□□ 0.26
CLN3-229ENST00000567963 HJURPQ8NCD3 748 aaPredicted RBP16.68■□□□□ 0.26
CLN3-229ENST00000567963 ADAM32Q8TC27 787 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 GATA6Q92908 595 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 TTC17Q96AE7 1141 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 MYEOVQ96EZ4 313 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 PRICKLE1Q96MT3 831 aaPredicted RBP16.68■□□□□ 0.26
CLN3-229ENST00000567963 CAMK1GQ96NX5 476 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 SLC4A5Q9BY07 1137 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 CYTH4Q9UIA0 394 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 AKAP13Q12802 2813 aa16.68■□□□□ 0.26
CLN3-229ENST00000567963 TYW5A2RUC4 315 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 H0Y626 953 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 LETM1O95202 739 aaPredicted RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 TRIM16O95361 564 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 RDXP35241 583 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 RPS14P62263 151 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 RPS24P62847 133 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 NUMA1Q14980 2115 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 TRIP6Q15654 476 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 MS4A13Q5J8X5 152 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 ENOSF1Q7L5Y1 443 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 TMEM110Q86TL2 294 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 MYO19Q96H55 970 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 NUCKS1Q9H1E3 243 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 C6orf106Q9H6K1 298 aaPredicted RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 INTS6Q9UL03 887 aaKnown RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 NEUROG3Q9Y4Z2 214 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 E5RJQ4 531 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 CAPN9O14815 690 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 PAPSS1O43252 624 aaPredicted RBP16.67■□□□□ 0.26
CLN3-229ENST00000567963 DNTTP04053 509 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 GNA15P30679 374 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 BNC1Q01954 994 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 FSCBQ5H9T9 825 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 TRIM65Q6PJ69 517 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 TAC4Q86UU9 113 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 NAXDQ8IW45 347 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 CFAP52Q8N1V2 620 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 CARNMT1Q8N4J0 409 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 MED15Q96RN5 788 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 CRACR2AQ9BSW2 395 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 TRIM62Q9BVG3 475 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 BTBD1Q9H0C5 482 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 GAREM1Q9H706 876 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 POPDC2Q9HBU9 364 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 ACP6Q9NPH0 428 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 KIAA1468Q9P260 1216 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 RWDD2AQ9UIY3 292 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 ZMIZ1Q9ULJ6 1067 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 PCDHB9Q9Y5E1 797 aa16.67■□□□□ 0.26
CLN3-229ENST00000567963 ZZEF1O43149 2961 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 THAP12O43422 761 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 CSKP41240 450 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 ST8SIA6P61647 398 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 YWHAZP63104 245 aaKnown RBP16.66■□□□□ 0.26
CLN3-229ENST00000567963 ZNF423Q2M1K9 1284 aa16.66■□□□□ 0.26
CLN3-229ENST00000567963 DCAF6Q58WW2 860 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms