RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SND1Q7KZF4 910 aaKnown RBP eCLIP20.24■□□□□ 0.831e-7■■■□□ 15.8
CLN3-225ENST00000566824 STRADAQ7RTN6 431 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.24■□□□□ 0.83
CLN3-225ENST00000566824 CPNE8Q86YQ8 564 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 TMEM139Q8IV31 216 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 ZNF683Q8IZ20 524 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 NUP85Q9BW27 656 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 ZDHHC4Q9NPG8 344 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 TFR2Q9UP52 801 aa20.24■□□□□ 0.83
CLN3-225ENST00000566824 PSMA2P25787 234 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 EIF2DP41214 584 aaKnown RBP20.23■□□□□ 0.83
CLN3-225ENST00000566824 SEC13P55735 322 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 C1orf228Q6PIY5 440 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 RAD9BQ6WBX8 426 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 IMPACTQ9P2X3 320 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 DEC1Q9P2X7 70 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 SLC12A6Q9UHW9 1150 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 VANGL2Q9ULK5 521 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 SCINQ9Y6U3 715 aa20.23■□□□□ 0.83
CLN3-225ENST00000566824 GOLGA6L3A6NEY3 463 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 PRRT4C9JH25 899 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 CYBBP04839 570 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 H2AFZP0C0S5 128 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 DRD1P21728 446 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 ADRA1BP35368 520 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 DGKGP49619 791 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 GEN1Q17RS7 908 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 GRAMD4Q6IC98 578 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 H2AFVQ71UI9 128 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 HJURPQ8NCD3 748 aaPredicted RBP20.22■□□□□ 0.83
CLN3-225ENST00000566824 XPO6Q96QU8 1125 aaKnown RBP20.22■□□□□ 0.83
CLN3-225ENST00000566824 PEBP4Q96S96 227 aa20.22■□□□□ 0.83
CLN3-225ENST00000566824 A0A0A0MRY4 1105 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 F5H5T6 163 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 FAM72CH0Y354 149 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 RNF40O75150 1001 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 APODP05090 189 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 TCF4P15884 667 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 GRIA2P42262 883 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 RPS9P46781 194 aaKnown RBP20.21■□□□□ 0.83
CLN3-225ENST00000566824 MTAPQ13126 283 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 FSCBQ5H9T9 825 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 DGKKQ5KSL6 1271 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 FAM72AQ5TYM5 149 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 FAM72DQ6L9T8 149 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 SCYL2Q6P3W7 929 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 FAM72BQ86X60 149 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 PYROXD2Q8N2H3 581 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 TERB1Q8NA31 727 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 DTWD2Q8NBA8 298 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 LMLNQ96KR4 655 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 DDX50Q9BQ39 737 aaKnown RBP20.21■□□□□ 0.83
CLN3-225ENST00000566824 CHRDQ9H2X0 955 aa20.21■□□□□ 0.83
CLN3-225ENST00000566824 MRPL47Q9HD33 250 aaKnown RBP20.21■□□□□ 0.83
CLN3-225ENST00000566824 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.2■□□□□ 0.82
CLN3-225ENST00000566824 CNTN5O94779 1100 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 LCA5LO95447 670 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 TMEM253P0C7T8 217 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 HLA-FP30511 346 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 CD70P32970 193 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 LRRC32Q14392 662 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 C10orf76Q5T2E6 689 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 TMEM215Q68D42 235 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 CYP4V2Q6ZWL3 525 aaPredicted RBP20.2■□□□□ 0.82
CLN3-225ENST00000566824 CARNMT1Q8N4J0 409 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 HAPLN3Q96S86 360 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 OSGEPQ9NPF4 335 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 GPATCH2LQ9NWQ4 482 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 ANAPC7Q9UJX3 599 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 SLC27A6Q9Y2P4 619 aa20.2■□□□□ 0.82
CLN3-225ENST00000566824 REXO2Q9Y3B8 237 aaKnown RBP20.2■□□□□ 0.82
CLN3-225ENST00000566824 TBC1D3BA6NDS4 549 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 LRCH4O75427 683 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 KIR2DL1P43626 348 aaPredicted RBP20.19■□□□□ 0.82
CLN3-225ENST00000566824 NUMBP49757 651 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 C5orf22Q49AR2 442 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 ALFQ53S48 1182 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 C2orf27AQ580R0 203 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 MPP7Q5T2T1 576 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 TMTC1Q8IUR5 882 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 OR52K2Q8NGK3 314 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 FNIP1Q8TF40 1166 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 CTNNBL1Q8WYA6 563 aaPredicted RBP20.19■□□□□ 0.82
CLN3-225ENST00000566824 RPRD1AQ96P16 312 aaPredicted RBP20.19■□□□□ 0.82
CLN3-225ENST00000566824 ABCB8Q9NUT2 735 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 MPP6Q9NZW5 540 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 CTTNBP2NLQ9P2B4 639 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 PCSK1NQ9UHG2 260 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 RAPGEFL1Q9UHV5 662 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 FZD10Q9ULW2 581 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 NEU3Q9UQ49 428 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 PAXBP1Q9Y5B6 917 aa20.19■□□□□ 0.82
CLN3-225ENST00000566824 E9PAM4 449 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 NCAM2O15394 837 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 MIPP30301 263 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 CA9Q16790 459 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 CCDC170Q8IYT3 715 aa20.18■□□□□ 0.82
CLN3-225ENST00000566824 MAML2Q8IZL2 1156 aaPredicted RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 CCAR2Q8N163 923 aaKnown RBP20.18■□□□□ 0.82
CLN3-225ENST00000566824 RPLP0P6Q8NHW5 317 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms