RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PIK3R6Q5UE93 754 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 MSANTD2Q6P1R3 559 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 DBX2Q6ZNG2 339 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 SCML4Q8N228 414 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 BIRC7Q96CA5 298 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 MYEOVQ96EZ4 313 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 GSDMAQ96QA5 445 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 TM9SF3Q9HD45 589 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 BTBD3Q9Y2F9 522 aa17.54■□□□□ 0.4
CLN3-211ENST00000564091 ADAMTS9Q9P2N4 1935 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 SMG1Q96Q15 3661 aaKnown RBP17.53■□□□□ 0.4
CLN3-211ENST00000564091 GOLGA8CPA6NN73 597 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 M0QYV0 167 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 ACSL4O60488 711 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 IGLV3-27P01718 113 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 DNTTP04053 509 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 PAEPP09466 180 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 ATXN1LP0C7T5 689 aaKnown RBP17.53■□□□□ 0.4
CLN3-211ENST00000564091 POLR2EP19388 210 aaKnown RBP17.53■□□□□ 0.4
CLN3-211ENST00000564091 SLC11A2P49281 568 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 FMO5P49326 533 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 TBX4P57082 545 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 COL9A2Q14055 689 aaPredicted RBP17.53■□□□□ 0.4
CLN3-211ENST00000564091 CNGA2Q16280 664 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 NADSYN1Q6IA69 706 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 C19orf48Q6RUI8 117 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 MARCH9Q86YJ5 346 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 PPM1KQ8N3J5 372 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 BAHD1Q8TBE0 780 aaPredicted RBP17.53■□□□□ 0.4
CLN3-211ENST00000564091 IRGQQ8WZA9 623 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 LMLNQ96KR4 655 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 MIS12Q9H081 205 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 TOR4AQ9NXH8 423 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 SUN2Q9UH99 717 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLN3-211ENST00000564091 ANKRD6Q9Y2G4 727 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 PCDHGB2Q9Y5G2 931 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 MYH10P35580 1976 aa17.53■□□□□ 0.4
CLN3-211ENST00000564091 SMC2O95347 1197 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 LTFP02788 710 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 C7P10643 843 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 ZBTB16Q05516 673 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 LRRC63Q05C16 580 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 KCNT1Q5JUK3 1230 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 MPP7Q5T2T1 576 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 NUGGCQ68CJ6 796 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 ISM2Q6H9L7 571 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 MFN1Q8IWA4 741 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 UNC45BQ8IWX7 931 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 MDM1Q8TC05 714 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 GANCQ8TET4 914 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 SMARCE1Q969G3 411 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 PRICKLE1Q96MT3 831 aaPredicted RBP17.52■□□□□ 0.4
CLN3-211ENST00000564091 NT5C1BQ96P26 610 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 CCDC86Q9H6F5 360 aaKnown RBP17.52■□□□□ 0.4
CLN3-211ENST00000564091 FBRSQ9HAH7 460 aa17.52■□□□□ 0.4
CLN3-211ENST00000564091 KIAA1522Q9P206 1035 aaPredicted RBP17.52■□□□□ 0.4
CLN3-211ENST00000564091 FAM47DPA6NHR8 397 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 FLRT2O43155 660 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 FYNP06241 537 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 RPS24P62847 133 aaKnown RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 SUZ12Q15022 739 aaKnown RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 TEAD4Q15561 434 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 TTC31Q49AM3 519 aaPredicted RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 ZNF776Q68DI1 518 aaPredicted RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 MMS22LQ6ZRQ5 1243 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 RRAGAQ7L523 313 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 ENGASEQ8NFI3 743 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 SPATA20Q8TB22 786 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 GOLGA1Q92805 767 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 TTC17Q96AE7 1141 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 MYO19Q96H55 970 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 HSFY1Q96LI6 401 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 CDC6Q99741 560 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 ORAI3Q9BRQ5 295 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 SGK2Q9HBY8 427 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 METTL14Q9HCE5 456 aaKnown RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 OSGEPQ9NPF4 335 aa17.51■□□□□ 0.39
CLN3-211ENST00000564091 INTS6Q9UL03 887 aaKnown RBP17.51■□□□□ 0.39
CLN3-211ENST00000564091 H0Y8X5 98 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 IRAK2O43187 625 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 SIN3BO75182 1162 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 CD27P26842 260 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 CSKP41240 450 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 GRIA4P48058 902 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 CCDC40Q4G0X9 1142 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 FSCBQ5H9T9 825 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 TMPRSS7Q7RTY8 843 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 SCUBE3Q8IX30 993 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 CFAP52Q8N1V2 620 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 CARNMT1Q8N4J0 409 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 FIBINQ8TAL6 211 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 LMO3Q8TAP4 145 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 ADAM32Q8TC27 787 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 DQX1Q8TE96 717 aaKnown RBP17.5■□□□□ 0.39
CLN3-211ENST00000564091 AZIN2Q96A70 460 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 FCRL2Q96LA5 508 aaPredicted RBP17.5■□□□□ 0.39
CLN3-211ENST00000564091 MRGPRX3Q96LB0 322 aa17.5■□□□□ 0.39
CLN3-211ENST00000564091 NUCKS1Q9H1E3 243 aaKnown RBP17.5■□□□□ 0.39
CLN3-211ENST00000564091 RSPH9Q9H1X1 276 aaPredicted RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms