RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZBTB14O43829 449 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 OR6B1O95007 311 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 RALBP11234 206 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 MSX2P35548 267 aaPredicted RBP13.57□□□□□ -0.24
CLN3-210ENST00000563874 ZNF280AP59817 542 aaPredicted RBP13.57□□□□□ -0.24
CLN3-210ENST00000563874 SEMA5AQ13591 1074 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 MARK2Q7KZI7 788 aaKnown RBP13.57□□□□□ -0.24
CLN3-210ENST00000563874 COLGALT1Q8NBJ5 622 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 HTR3CQ8WXA8 447 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 AZIN2Q96A70 460 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 CSPG4P5Q96PW8 444 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 KCTD15Q96SI1 283 aaPredicted RBP13.57□□□□□ -0.24
CLN3-210ENST00000563874 GORASP1Q9BQQ3 440 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 CENPKQ9BS16 269 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 TMPRSS4Q9NRS4 437 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 IRAK4Q9NWZ3 460 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 COPG2Q9UBF2 871 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 SYNJ2BP-COX16A0A087WUM0 186 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 GOLGA8QA0A0J9YX86 632 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 GOLGA8OA6NCC3 632 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 GOLGA8NF8WBI6 632 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 PPEF2O14830 753 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 MDM4O15151 490 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 NIPAL4Q0D2K0 466 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 PGM2L1Q6PCE3 622 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 DLK2Q6UY11 383 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 ZNF781Q8N8C0 355 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 CDKL2Q92772 493 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 GCNAQ96QF7 691 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 TBCBQ99426 244 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 SYBUQ9NX95 663 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 MTMR10Q9NXD2 777 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 DPP3Q9NY33 737 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 STK32BQ9NY57 414 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 COX16Q9P0S2 106 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 TXNDC16Q9P2K2 825 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 SNX9Q9Y5X1 595 aa13.57□□□□□ -0.24
CLN3-210ENST00000563874 CAPN8A6NHC0 703 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ZNF195O14628 629 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 USP12O75317 370 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 PGM3O95394 542 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 LCP1P13796 627 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 UQCRBP14927 111 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 RPS6KA3P51812 740 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ABCE1P61221 599 aaKnown RBP13.56□□□□□ -0.24
CLN3-210ENST00000563874 HNRNPDQ14103 355 aaKnown RBP13.56□□□□□ -0.24
CLN3-210ENST00000563874 SLC9B1Q4ZJI4 515 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 FBXL19Q6PCT2 694 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 SATL1Q86VE3 508 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 PLD6Q8N2A8 252 aaKnown RBP13.56□□□□□ -0.24
CLN3-210ENST00000563874 ACTRT2Q8TDY3 377 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ARNTL2Q8WYA1 636 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 QKIQ96PU8 341 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLN3-210ENST00000563874 COG4Q9H9E3 785 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ZNF112Q9UJU3 913 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ITGA11Q9UKX5 1188 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ANK1P16157 1881 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 VTNP04004 478 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 SPATA31D3P0C874 917 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ATICP31939 592 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 SERPINB5P36952 375 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ATXN3P54252 364 aaPredicted RBP13.56□□□□□ -0.24
CLN3-210ENST00000563874 INCA1Q0VD86 236 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 CBLBQ13191 982 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 DLG2Q15700 870 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 NCBP2-AS2Q69YL0 99 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 SPATA31D4Q6ZUB0 917 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 FAM131BQ86XD5 332 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 FBXO16Q8IX29 292 aaPredicted RBP13.56□□□□□ -0.24
CLN3-210ENST00000563874 MAPK15Q8TD08 544 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 CMTM5Q96DZ9 223 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 PDZD7Q9H5P4 517 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 DCDC2Q9UHG0 476 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 NME7Q9Y5B8 376 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 EVPLQ92817 2033 aa13.56□□□□□ -0.24
CLN3-210ENST00000563874 ANKRD33BA6NCL7 494 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DPYSL4O14531 572 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ATP5BP06576 529 aaKnown RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 EDNRBP24530 442 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 CNTFP26441 200 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 PSMB4P28070 264 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 PGGT1BP53609 377 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 SOWAHAQ2M3V2 549 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 NAPRTQ6XQN6 538 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ADGRG6Q86SQ4 1221 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 CCNYQ8ND76 341 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 NDRG1Q92597 394 aaKnown RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 KIF12Q96FN5 646 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 OCEL1Q9H607 264 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 CAB39LQ9H9S4 337 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 SF3B1O75533 1304 aaKnown RBP eCLIP13.55□□□□□ -0.243e-9■■■■■ 164.7
CLN3-210ENST00000563874 AIM2O14862 343 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ALDH1A2O94788 518 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 COX4I1P13073 169 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 CPA3P15088 417 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ARF4P18085 180 aaPredicted RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 PDK3Q15120 406 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DPYSL2Q16555 572 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 TP53INP2Q8IXH6 220 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 AGAP3Q96P47 875 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms