RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HCN2Q9UL51 889 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 VANGL2Q9ULK5 521 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 SCINQ9Y6U3 715 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 HOXC11O43248 304 aaPredicted RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 TULP3O75386 442 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 MTA2O94776 668 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CNTN5O94779 1100 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 LATS1O95835 1130 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 EGFP01133 1207 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CISD3P0C7P0 127 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 ALADP13716 330 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 MIPP30301 263 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 ADRA1BP35368 520 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CYLC1P35663 651 aaPredicted RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 GALK1P51570 392 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 KPNA1P52294 538 aaPredicted RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 GSDMDP57764 484 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 PFKPQ01813 784 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 AUHQ13825 339 aaKnown RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 ALFQ53S48 1182 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 FSCBQ5H9T9 825 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 BRMS1LQ5PSV4 323 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 MANEALQ5VSG8 457 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 FBXL22Q6P050 247 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 SCYL2Q6P3W7 929 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 PKN3Q6P5Z2 889 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CHSY1Q86X52 802 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 UNC45BQ8IWX7 931 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CCDC105Q8IYK2 499 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 FNIP1Q8TF40 1166 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 CTNNBL1Q8WYA6 563 aaPredicted RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 RNF34Q969K3 372 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 BTN2A3PQ96KV6 586 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 WDCPQ9H6R7 721 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 LTB4R2Q9NPC1 389 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 ZDHHC4Q9NPG8 344 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 POLR3BQ9NW08 1133 aaPredicted RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 STIM2Q9P246 746 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 ZNF212Q9UDV6 495 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 PCSK1NQ9UHG2 260 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 NDRG2Q9UN36 371 aaKnown RBP10.13□□□□□ -0.79
CLK3-208ENST00000562626 ZNF510Q9Y2H8 683 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 HYOU1Q9Y4L1 999 aa10.13□□□□□ -0.79
CLK3-208ENST00000562626 TP53BP1Q12888 1972 aaPredicted RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 TMEM110-MUSTN1A8MSY1 372 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 PJA2O43164 708 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 CACNG3O60359 315 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 TBL1XO60907 577 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 ADH1CP00326 375 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 F9P00740 461 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 SLC11A2P49281 568 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 MLLT6P55198 1093 aaPredicted RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 SLC25A11Q02978 314 aaKnown RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 PRKCQQ04759 706 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 GAD2Q05329 585 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 SEMA3BQ13214 749 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 GAS6Q14393 721 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 TCEAL1Q15170 157 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 SMTNL2Q2TAL5 461 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 C5orf22Q49AR2 442 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 ATP13A4Q4VNC1 1196 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 TMEM196Q5HYL7 178 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 TMEM215Q68D42 235 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 RALGPS2Q86X27 583 aaPredicted RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 NIPA2Q8N8Q9 360 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 ATP6V0D2Q8N8Y2 350 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 DDI1Q8WTU0 396 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 RFFLQ8WZ73 363 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 FAM3CQ92520 227 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 NTAN1Q96AB6 310 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 LMLNQ96KR4 655 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 SNRNP25Q9BV90 132 aaKnown RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 MRPL47Q9HD33 250 aaKnown RBP10.12□□□□□ -0.79
CLK3-208ENST00000562626 KLHL11Q9NVR0 708 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 C2orf42Q9NWW7 574 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 MPP6Q9NZW5 540 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 UVRAGQ9P2Y5 699 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 FBXO10Q9UK96 956 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 INTUQ9ULD6 942 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 FZD10Q9ULW2 581 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 ADGRG1Q9Y653 693 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 LRRK1Q38SD2 2015 aa10.12□□□□□ -0.79
CLK3-208ENST00000562626 IGLV3-10A0A075B6K4 115 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 KANSL1LA0AUZ9 987 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 PRRT4C9JH25 899 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 E9PAM4 449 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 K7EQS6 105 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 BUB1O43683 1085 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 BUB1BO60566 1050 aaPredicted RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 GPR37L1O60883 481 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 PROSCO94903 275 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 DCNP07585 359 aaKnown RBP10.11□□□□□ -0.79
CLK3-208ENST00000562626 SLC2A3P11169 496 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 CHRNB1P11230 501 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 HLA-FP30511 346 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 CD70P32970 193 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 CHKAP35790 457 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 ARHGAP25P42331 645 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 VAV2P52735 878 aa10.11□□□□□ -0.79
CLK3-208ENST00000562626 NHLH1Q02575 133 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms