RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PSMG2Q969U7 264 aa21.93■■□□□ 1.1
CLN3-209ENST00000561689 TRMT2BQ96GJ1 504 aaKnown RBP21.93■■□□□ 1.1
CLN3-209ENST00000561689 TXLNGYQ9BZA5 131 aa21.93■■□□□ 1.1
CLN3-209ENST00000561689 DNAJC17Q9NVM6 304 aaKnown RBP21.93■■□□□ 1.1
CLN3-209ENST00000561689 LZTS1Q9Y250 596 aa21.93■■□□□ 1.1
CLN3-209ENST00000561689 CFAP69A5D8W1 941 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 CAV1Q03135 178 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 UAP1Q16222 522 aaPredicted RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 ARTNQ5T4W7 220 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 LILRA6Q6PI73 481 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 MRPL43Q8N983 215 aaKnown RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 CCNYQ8ND76 341 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 EMILIN2Q9BXX0 1053 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 TMEM51Q9NW97 253 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 DNMT3LQ9UJW3 386 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 CHD9Q3L8U1 2897 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 GOLGA6BA6NDN3 693 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 C2orf71A6NGG8 1288 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 E9PAM4 449 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 COCHO43405 550 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 IGLV3-27P01718 113 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 VAV1P15498 845 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 TUBP50607 506 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 KCNQ1P51787 676 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 AP1B1Q10567 949 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 PDK1Q15118 436 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 RNASEH2BQ5TBB1 312 aaKnown RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 MANEALQ5VSG8 457 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 PDZD4Q76G19 769 aaPredicted RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 TADA2BQ86TJ2 420 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 MICAL1Q8TDZ2 1067 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 UBLCP1Q8WVY7 318 aaPredicted RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 RTP4Q96DX8 246 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 CDK5RAP1Q96SZ6 601 aaKnown RBP21.92■■□□□ 1.1
CLN3-209ENST00000561689 PRDM12Q9H4Q4 367 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 TLR9Q9NR96 1032 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 SLC12A6Q9UHW9 1150 aa21.92■■□□□ 1.1
CLN3-209ENST00000561689 CA3P07451 260 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 MAGEA10P43363 369 aaPredicted RBP21.91■■□□□ 1.1
CLN3-209ENST00000561689 SHHQ15465 462 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 MS4A13Q5J8X5 152 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 HEATR6Q6AI08 1181 aaKnown RBP21.91■■□□□ 1.1
CLN3-209ENST00000561689 ATP6V0D2Q8N8Y2 350 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 CCDC110Q8TBZ0 833 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 TBC1D31Q96DN5 1066 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 CELF6Q96J87 481 aaKnown RBP21.91■■□□□ 1.1
CLN3-209ENST00000561689 BTN2A3PQ96KV6 586 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 C1orf74Q96LT6 269 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 ZNF334Q9HCZ1 680 aaPredicted RBP21.91■■□□□ 1.1
CLN3-209ENST00000561689 VANGL2Q9ULK5 521 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 RWDD3Q9Y3V2 267 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 IRAK3Q9Y616 596 aa21.91■■□□□ 1.1
CLN3-209ENST00000561689 C2orf78A6NCI8 922 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 HACD1B0YJ81 288 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 ACTN2P35609 894 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 CFAP58Q5T655 872 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 TMEM150AQ86TG1 271 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 KREMEN2Q8NCW0 462 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 HTR3CQ8WXA8 447 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 MPP6Q9NZW5 540 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 PLXNA4Q9HCM2 1894 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 PPP1R12AO14974 1030 aaPredicted RBP21.9■■□□□ 1.1
CLN3-209ENST00000561689 GRM6O15303 877 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 C8AP07357 584 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 PMS2P54278 862 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 BASP1P80723 227 aaKnown RBP21.9■■□□□ 1.1
CLN3-209ENST00000561689 AUHQ13825 339 aaKnown RBP21.9■■□□□ 1.1
CLN3-209ENST00000561689 MORF4L2Q15014 288 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 PRKD1Q15139 912 aaPredicted RBP21.9■■□□□ 1.1
CLN3-209ENST00000561689 ANKRD22Q5VYY1 191 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 IQCKQ8N0W5 287 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 ZNF276Q8N554 614 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 CPT1BQ92523 772 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 ZIM3Q96PE6 472 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 RNF38Q9H0F5 515 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 ACBD3Q9H3P7 528 aa21.9■■□□□ 1.1
CLN3-209ENST00000561689 FARP1Q9Y4F1 1045 aaPredicted RBP21.9■■□□□ 1.1
CLN3-209ENST00000561689 LAMA3Q16787 3333 aa21.89■■□□□ 1.1
CLN3-209ENST00000561689 GOLGA8MH3BSY2 632 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 AGPSO00116 658 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 HOXC13P31276 330 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 IRS1P35568 1242 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 KPNA1P52294 538 aaPredicted RBP21.89■■□□□ 1.09
CLN3-209ENST00000561689 RING1Q06587 406 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 SYCP2LQ5T4T6 812 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 RAP1GAP2Q684P5 730 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 ITIH5Q86UX2 942 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 P2RY11Q96G91 374 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 SEMA4AQ9H3S1 761 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 PAK5Q9P286 719 aa21.89■■□□□ 1.09
CLN3-209ENST00000561689 UXTQ9UBK9 157 aaPredicted RBP21.89■■□□□ 1.09
CLN3-209ENST00000561689 HBS1LQ9Y450 684 aaKnown RBP21.89■■□□□ 1.09
CLN3-209ENST00000561689 GLUD1P00367 558 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 LRG1P02750 347 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 HTR7P34969 479 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 SERPINB6P35237 376 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 NRG1Q02297 640 aaPredicted RBP21.88■■□□□ 1.09
CLN3-209ENST00000561689 CAMK1Q14012 370 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 SLMAPQ14BN4 828 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 GLIPR1L2Q4G1C9 344 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms