RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 C19orf48Q6RUI8 117 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 LCLAT1Q6UWP7 414 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 USP30Q70CQ3 517 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 BHLHA9Q7RTU4 235 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 FIBINQ8TAL6 211 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 BAHD1Q8TBE0 780 aaPredicted RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 IRGQQ8WZA9 623 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 GSDMAQ96QA5 445 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 METTL14Q9HCE5 456 aaKnown RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 TM9SF3Q9HD45 589 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 DKK4Q9UBT3 224 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 ARMCX3Q9UH62 379 aaPredicted RBP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.54□□□□□ -0.88
HDDC3-204ENST00000559834 CABIN1Q9Y6J0 2220 aa9.54□□□□□ -0.88
HDDC3-204ENST00000559834 LRRC72A6NJI9 287 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 O00370 1275 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 VILLO15195 856 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 MSI1O43347 362 aaKnown RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 ACSL4O60488 711 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 DKK1O94907 266 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 FBXO21O94952 628 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 SMC2O95347 1197 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 MOCS3O95396 460 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 ASLP04424 464 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 CDK4P11802 303 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 PRCPP42785 496 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 TBX4P57082 545 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 DAOAP59103 153 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 RACK1P63244 317 aaKnown RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 LRMPQ12912 555 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 ZNF658Q5TYW1 1059 aaPredicted RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 KIAA0895LQ68EN5 471 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 MSANTD2Q6P1R3 559 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 RFWD3Q6PCD5 774 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 TMEM270Q6UE05 265 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 MFN1Q8IWA4 741 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 SMYD4Q8IYR2 804 aaPredicted RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 ZNF366Q8N895 744 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 PDCD7Q8N8D1 485 aaKnown RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 KDM1BQ8NB78 822 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 HJURPQ8NCD3 748 aaPredicted RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 SLC35F5Q8WV83 523 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 TTC17Q96AE7 1141 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 HSFY1Q96LI6 401 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 ACE2Q9BYF1 805 aaPredicted RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 RSPH9Q9H1X1 276 aaPredicted RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 FBXL12Q9NXK8 326 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 STIM2Q9P246 746 aa9.53□□□□□ -0.88
HDDC3-204ENST00000559834 TPX2Q9ULW0 747 aaKnown RBP9.53□□□□□ -0.88
HDDC3-204ENST00000559834 CFAP47Q6ZTR5 3102 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 GOLGA6L7A0A1B0GV03 622 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 A0A1W2PPC4 97 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 TARSL2A2RTX5 802 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 GOLGA6L4A6NEF3 574 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 TRABD2BA6NFA1 517 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 FAM47DPA6NHR8 397 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 E9PAM4 449 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 H0Y8X5 98 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 KCNK3O14649 394 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PMM2O15305 246 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 SART1O43290 800 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 IGLV3-27P01718 113 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 LTFP02788 710 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 CD70P32970 193 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 NNMTP40261 264 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 CTSKP43235 329 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 ATRXP46100 2492 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 RGS7P49802 495 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 LRRC63Q05C16 580 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 STIM1Q13586 685 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 COL28A1Q2UY09 1125 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 HNRNPA1L2Q32P51 320 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PKDCCQ504Y2 493 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 COBLL1Q53SF7 1204 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 ANKRD40Q6AI12 368 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PMF1Q6P1K2 205 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PDZD3Q86UT5 571 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 CARNMT1Q8N4J0 409 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 MDM1Q8TC05 714 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 HNRNPLLQ8WVV9 542 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 NT5C1BQ96P26 610 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 OMDQ99983 421 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 TRIM62Q9BVG3 475 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PABPC3Q9H361 631 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 SCUBE2Q9NQ36 999 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 TOR4AQ9NXH8 423 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 FTSJ1Q9UET6 329 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 HOOK1Q9UJC3 728 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 ZDHHC9Q9Y397 364 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 PCDHB4Q9Y5E5 795 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 KNTC1P50748 2209 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 URB1O60287 2271 aaKnown RBP9.52□□□□□ -0.89
HDDC3-204ENST00000559834 LAMA1P25391 3075 aa9.52□□□□□ -0.89
HDDC3-204ENST00000559834 CKAP5Q14008 2032 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 A0A1B0GTQ1 180 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 EIF4E1BA6NMX2 242 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 M0QYV0 167 aa9.51□□□□□ -0.89
HDDC3-204ENST00000559834 PAPSS1O43252 624 aaPredicted RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 SRPRAP08240 638 aaKnown RBP9.51□□□□□ -0.89
HDDC3-204ENST00000559834 C1SP09871 688 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms