RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PSMD9O00233 223 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 MGST3O14880 152 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SPTLC2O15270 562 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 NKX2-8O15522 239 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 BAIAP3O94812 1187 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RTN3O95197 1032 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 LARGE1O95461 756 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3HP0C7X1 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 EBLN1P0CF75 366 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TMIGD3P0DMS9 266 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 CD19P15391 556 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CHN1P15882 459 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ADRA1DP25100 572 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 AVPR2P30518 371 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CYP2C18P33260 490 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 GALNSP34059 522 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 GRK5P34947 590 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 IGHMBP2P38935 993 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 PLA2G5P39877 138 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RGS2P41220 211 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 DGKQP52824 942 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RCAN1P53805 252 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CASP6P55212 293 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RBM6P78332 1123 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 GPC5P78333 572 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 B4GALNT1Q00973 533 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 LMAN2Q12907 356 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 DNASE1L3Q13609 305 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 KRT32Q14532 448 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ANKRD1Q15327 319 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ST3GAL2Q16842 350 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CTXN3Q4LDR2 81 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 AWAT1Q58HT5 328 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RNASE12Q5GAN4 147 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 ZNF569Q5MCW4 686 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 L1TD1Q5T7N2 865 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 ZNF618Q5T7W0 954 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 HAUS3Q68CZ6 603 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3GQ6DHY5 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3CQ6IPX1 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ACAD10Q6JQN1 1059 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 FBXO42Q6P3S6 717 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ACSM6Q6P461 480 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SLC22A25Q6T423 547 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 KIRREL2Q6UWL6 708 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 KYAT3Q6YP21 454 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 PTCHD4Q6ZW05 846 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RNF144BQ7Z419 303 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TICAM2Q86XR7 235 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ARHGEF19Q8IW93 802 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3Q8IZP1 549 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 ZNF366Q8N895 744 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 LSM14AQ8ND56 463 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 TDRD7Q8NHU6 1098 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 MAFAQ8NHW3 353 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 PROKR1Q8TCW9 393 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RUFY2Q8WXA3 655 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CENPIQ92674 756 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 HDAC2Q92769 488 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 ARRDC3Q96B67 414 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 RNF125Q96EQ8 232 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 NEUROD6Q96NK8 337 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 MMS19Q96T76 1030 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 MPHOSPH8Q99549 860 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 AIFM2Q9BRQ8 373 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 HDHD5Q9BXW7 423 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CTDSP1Q9GZU7 261 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ZCWPW1Q9H0M4 648 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SLC25A18Q9H1K4 315 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 UNC45AQ9H3U1 944 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SERHL2Q9H4I8 314 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CDCP1Q9H5V8 836 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 STN1Q9H668 368 aaKnown RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 USP29Q9HBJ7 922 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 NOD2Q9HC29 1040 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 PREBQ9HCU5 417 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ARHGEF3Q9NR81 526 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 DUSP22Q9NRW4 184 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 KLC4Q9NSK0 619 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ABHD10Q9NUJ1 306 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBCCD1Q9NVR7 557 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 IRAK4Q9NWZ3 460 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ZDHHC7Q9NXF8 308 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 DLL3Q9NYJ7 618 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 PI4KBQ9UBF8 816 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SWAP70Q9UH65 585 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 SLC13A4Q9UKG4 626 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 GABRQQ9UN88 632 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 ST3GAL5Q9UNP4 418 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 FZD1Q9UP38 647 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 CAMK2AQ9UQM7 478 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TMEM98Q9Y2Y6 226 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 UBE2J1Q9Y385 318 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 SPATA31A6Q5VVP1 1343 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 LOC105378220A0A1B0GUY1 285 aaPredicted RBP1.82□□□□□ -2.12
USP3-209ENST00000558925 PIPSLA2A3N6 862 aa1.82□□□□□ -2.12
USP3-209ENST00000558925 PGPEP1LA6NFU8 196 aa1.82□□□□□ -2.12
USP3-209ENST00000558925 DNAJC9-AS1A6NH13 148 aa1.82□□□□□ -2.12
USP3-209ENST00000558925 FAM90A7PA6NKC0 464 aa1.82□□□□□ -2.12
USP3-209ENST00000558925 C16orf96A6NNT2 1141 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms