RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ADCY6O43306 1168 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 B4GALT4O60513 344 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SNX2O60749 519 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MFAP3LO75121 409 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 GPR32O75388 356 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SKAP2O75563 359 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 RPS6KA5O75582 802 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 GFPT2O94808 682 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 VTNP04004 478 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CSTBP04080 98 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 SERPING1P05155 500 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TMEM191BP0C7N4 346 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MYF5P13349 255 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 UCHL3P15374 230 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 FERP16591 822 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ATF7P17544 494 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 ABCB4P21439 1286 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TBXAS1P24557 533 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 PTX3P26022 381 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 PON1P27169 355 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ATICP31939 592 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 HNRNPH3P31942 346 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 BCL6P41182 706 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 WASP42768 502 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CASP4P49662 377 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MRPS6P82932 125 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 DRP2Q13474 957 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TRPC3Q13507 836 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SPA17Q15506 151 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MEA1Q16626 185 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 PTGISQ16647 500 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SGSM1Q2NKQ1 1148 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ZNF568Q3ZCX4 644 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 PAN2Q504Q3 1202 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 FAM133BQ5BKY9 247 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 FAM209BQ5JX69 171 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 RTP2Q5QGT7 225 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 KLHDC7AQ5VTJ3 777 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CFAP161Q6P656 301 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SLC27A1Q6PCB7 646 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 KLHDC10Q6PID8 442 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 RNF111Q6ZNA4 994 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 PDZD4Q76G19 769 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 KRT77Q7Z794 578 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SERINC5Q86VE9 423 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 BRSK2Q8IWQ3 736 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TMEM130Q8N3G9 435 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TOP6BLQ8N6T0 577 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 NAT16Q8N8M0 369 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 TC2NQ8N9U0 490 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 FBXL13Q8NEE6 735 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 DNAJB3Q8WWF6 145 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CCDC127Q96BQ5 260 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 MTFMTQ96DP5 389 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 EEF2KMTQ96G04 330 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 BTBD6Q96KE9 485 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 NT5C1BQ96P26 610 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CGRRF1Q99675 332 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 APOL5Q9BWW9 433 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 LSM14BQ9BX40 385 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 TSGA10Q9BZW7 698 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 UNKQ9C0B0 810 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 FAM49AQ9H0Q0 323 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 MS4A5Q9H3V2 200 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 DEF6Q9H4E7 631 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 C11orf49Q9H6J7 331 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 RC3H2Q9HBD1 1191 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 PNPLA8Q9NP80 782 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ABHD10Q9NUJ1 306 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 INTS13Q9NVM9 706 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 RRN3Q9NYV6 651 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 AIPL1Q9NZN9 384 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 GCNT4Q9P109 453 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ANKFY1Q9P2R3 1169 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 CPSF3Q9UKF6 684 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 MAGED2Q9UNF1 606 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 SNX13Q9Y5W8 968 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 SETXQ7Z333 2677 aaKnown RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 TRANK1O15050 2925 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ADGRA3Q8IWK6 1321 aa5.42□□□□□ -1.54
LDLR-209ENST00000558528 ZFHX2Q9C0A1 2572 aaPredicted RBP5.42□□□□□ -1.54
LDLR-209ENST00000558528 LTBP2Q14767 1821 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 A0A088AWK7 358 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 A0A0A0MRY4 1105 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SHISA3A0PJX4 238 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ARHGEF37A1IGU5 675 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 C7orf72A4D263 438 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 GOLGA8IPA6NC78 632 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 GOLGA8JA6NMD2 632 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 IRAK2O43187 625 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 TSPAN1O60635 241 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 CD4P01730 458 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 C4BPAP04003 597 aaKnown RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 GYPCP04921 128 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ALDH2P05091 517 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 THP07101 528 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ADRB2P07550 413 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SYPP08247 313 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 CCDC175P0C221 793 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 STAG3L1P0CL83 205 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms