RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MTSS1LQ765P7 747 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 CHSY1Q86X52 802 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FAM72BQ86X60 149 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 PSTKQ8IV42 348 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 BBS7Q8IWZ6 715 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 KATNAL2Q8IYT4 538 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 BPIFB1Q8TDL5 484 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 UBE2Q2Q8WVN8 375 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 ALG3Q92685 438 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 FGF14Q92915 247 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 E2F7Q96AV8 911 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 ELSPBP1Q96BH3 223 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 C1orf74Q96LT6 269 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 KCTD15Q96SI1 283 aaPredicted RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 DDX50Q9BQ39 737 aaKnown RBP9.94□□□□□ -0.82
CUX1-216ENST00000558469 TLR10Q9BXR5 811 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 PLA2G2FQ9BZM2 168 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 OSBPL2Q9H1P3 480 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 LINC00597Q9H2U6 94 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 OBP2AQ9NY56 170 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 DNAI1Q9UI46 699 aa9.94□□□□□ -0.82
CUX1-216ENST00000558469 CTAGE9A4FU28 777 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 E9PAM4 449 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 F5H5T6 163 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 EEF2KO00418 725 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 KCNK3O14649 394 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 TRDMT1O14717 391 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 ECI2O75521 394 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 ZRANB2O95218 330 aaKnown RBP eCLIP9.93□□□□□ -0.82
CUX1-216ENST00000558469 CD48P09326 243 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 GOT1P17174 413 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 KDELR1P24390 212 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 CASQ1P31415 396 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 CXCR5P32302 372 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 CHKAP35790 457 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 VCPP55072 806 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 MMRN1Q13201 1228 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 ZNF211Q13398 564 aaPredicted RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 DPYSL3Q14195 570 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 GRM2Q14416 872 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 PDK2Q15119 407 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 DPYSL2Q16555 572 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 ACBD5Q5T8D3 534 aaPredicted RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 LRRC31Q6UY01 552 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 C14orf80Q86SX3 495 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 CCDC50Q8IVM0 306 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 MAP7D3Q8IWC1 876 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 MFSD6LQ8IWD5 586 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 YAF2Q8IY57 180 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 RCOR2Q8IZ40 523 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 LGI2Q8N0V4 545 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 EXD1Q8NHP7 514 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 RSAD2Q8WXG1 361 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 RAPGEF5Q92565 580 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 PSMB7Q99436 277 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 NAPGQ99747 312 aaPredicted RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 PRMT1Q99873 361 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 RPP25Q9BUL9 199 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 CALN1Q9BXU9 219 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 PCDH18Q9HCL0 1135 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 THG1LQ9NWX6 298 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 DUS2Q9NX74 493 aaKnown RBP9.93□□□□□ -0.82
CUX1-216ENST00000558469 TBC1D14Q9P2M4 693 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 THEGQ9P2T0 379 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 LIMD1Q9UGP4 676 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 STOML2Q9UJZ1 356 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 VANGL2Q9ULK5 521 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 WNT6Q9Y6F9 365 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 NUMBLQ9Y6R0 609 aa9.93□□□□□ -0.82
CUX1-216ENST00000558469 CHD5Q8TDI0 1954 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 KIAA1549LQ6ZVL6 1849 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 C3orf70A6NLC5 250 aaPredicted RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 ANHXE9PGG2 379 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 KIF2AO00139 706 aaPredicted RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 SLC9A3R1O14745 358 aaPredicted RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 FANCGO15287 622 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 DAPK3O43293 454 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 LRIG2O94898 1065 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 PYGMP11217 842 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 PSMC3P17980 439 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ARL4AP40617 200 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 IFNAR2P48551 515 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 SGSHP51688 502 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ARSEP51690 589 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 TPI1P60174 286 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 SEMA3BQ13214 749 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 HTR4Q13639 388 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 LLGL1Q15334 1064 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 AAK1Q2M2I8 961 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ANKRD20A8PQ5CZ79 823 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 RABGAP1LQ5R372 815 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 DCAF12L1Q5VU92 463 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 TRIM68Q6AZZ1 485 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 RWDD4Q6NW29 188 aaKnown RBP9.92□□□□□ -0.82
CUX1-216ENST00000558469 FBXL22Q6P050 247 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 AADACL2Q6P093 401 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 MFSD7Q6UXD7 560 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 TPGS1Q6ZTW0 290 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 FAM217AQ8IXS0 508 aa9.92□□□□□ -0.82
CUX1-216ENST00000558469 ZDHHC14Q8IZN3 488 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms