RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 IL1BP01584 269 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 GCKP35557 465 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 SULT1E1P49888 294 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PDE1BQ01064 536 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 BST2Q10589 180 aaKnown RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 TUBB3Q13509 450 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 DPY19L2Q6NUT2 758 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 TMPRSS6Q8IU80 811 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 SCUBE1Q8IWY4 988 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PLD6Q8N2A8 252 aaKnown RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 AGAP2Q99490 1192 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 DDX50Q9BQ39 737 aaKnown RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 FRMD8Q9BZ67 464 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 ADAMTS10Q9H324 1103 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 MROH8Q9H579 483 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 CAB39LQ9H9S4 337 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 DLGAP2Q9P1A6 1054 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 PPM1HQ9ULR3 514 aa13.26□□□□□ -0.29
LDLR-207ENST00000558013 CORO1CQ9ULV4 474 aaPredicted RBP13.26□□□□□ -0.29
LDLR-207ENST00000558013 ASB14A6NK59 587 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 SDR42E2A6NKP2 422 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 STAU1O95793 577 aaKnown RBP13.25□□□□□ -0.29
LDLR-207ENST00000558013 SLC1A6P48664 564 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 NIPAL4Q0D2K0 466 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 WASHC5Q12768 1159 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 PCLAFQ15004 111 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 LRRC36Q1X8D7 754 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 ZNF567Q8N184 647 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 OR52K1Q8NGK4 314 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 CFAP61Q8NHU2 1237 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 TUBB6Q9BUF5 446 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 THAP1Q9NVV9 213 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.25□□□□□ -0.296e-8■□□□□ 8.2
LDLR-207ENST00000558013 TAGLN3Q9UI15 199 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 KCNH4Q9UQ05 1017 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 SMIM28A0A1B0GU29 152 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 KPNA7A9QM74 516 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 KIF1CO43896 1103 aaKnown RBP13.25□□□□□ -0.29
LDLR-207ENST00000558013 PLIN3O60664 434 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 BAG2O95816 211 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 ITGA2BP08514 1039 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 USP4Q13107 963 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 TSNAXIP1Q2TAA8 658 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 FBXO47Q5MNV8 452 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 PRAMEF19Q5SWL8 479 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 MTBPQ96DY7 904 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 STX18Q9P2W9 335 aaKnown RBP13.25□□□□□ -0.29
LDLR-207ENST00000558013 PACSIN3Q9UKS6 424 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 FZD10Q9ULW2 581 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 SNX10Q9Y5X0 201 aa13.25□□□□□ -0.29
LDLR-207ENST00000558013 PDE5AO76074 875 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 LUC7L3O95232 432 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 ACADSP16219 412 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ARL4AP40617 200 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ZNF792Q3KQV3 632 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 OSTM1Q86WC4 334 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ARRDC4Q8NCT1 418 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 HIPK4Q8NE63 616 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 SH3TC2Q8TF17 1288 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 RNF139Q8WU17 664 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 CCDC124Q96CT7 223 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 PPP1R36Q96LQ0 422 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 SORT1Q99523 831 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 SGIP1Q9BQI5 828 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 KATNBL1Q9H079 304 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PIDD1Q9HB75 910 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 CYP4F11Q9HBI6 524 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PIGVQ9NUD9 493 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 UBP1Q9NZI7 540 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 RPS6KL1Q9Y6S9 549 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 SPECC1L-ADORA2AF8WAN1 911 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 M0QYT0 321 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ALDH1A2O94788 518 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 CPOXP36551 454 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 NR2C2P49116 596 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 BCAT1P54687 386 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ITGA9Q13797 1035 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 RNF220Q5VTB9 566 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 C1orf146Q5VVC0 180 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 NAIF1Q69YI7 327 aaPredicted RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 SLC27A1Q6PCB7 646 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PID1Q7Z2X4 250 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PIWIL2Q8TC59 973 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 PPP1R12CQ9BZL4 782 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ADARB2Q9NS39 739 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 RPL26L1Q9UNX3 145 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 NUP205Q92621 2012 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 GPR32O75388 356 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 LMNAP02545 664 aaKnown RBP13.24□□□□□ -0.29
LDLR-207ENST00000558013 TPH1P17752 444 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 MATKP42679 507 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 EPHB1P54762 984 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 IRF9Q00978 393 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 CBLBQ13191 982 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 ARHGAP17Q68EM7 881 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PHTF2Q8N3S3 785 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 BEST2Q8NFU1 509 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 PYDC1Q8WXC3 89 aa13.24□□□□□ -0.29
LDLR-207ENST00000558013 GORASP1Q9BQQ3 440 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms