RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SRGAP2O75044 1071 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 NFATC1O95644 943 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 PENKP01210 267 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 TNNT1P13805 278 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 DESP17661 470 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 GJA4P35212 333 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 SLC1A1P43005 524 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 SLC6A11P48066 632 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 MARCKSL1P49006 195 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 SEMA3BQ13214 749 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 ANO4Q32M45 955 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 ITPRIPL2Q3MIP1 535 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 EFHC2Q5JST6 749 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 MANEALQ5VSG8 457 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 CCAR2Q8N163 923 aaKnown RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 CPA6Q8N4T0 437 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 RNF10Q8N5U6 811 aaKnown RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 NAT16Q8N8M0 369 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 HSPH1Q92598 858 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 CD101Q93033 1021 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 TMA16Q96EY4 203 aaKnown RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 KCTD15Q96SI1 283 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 BBS2Q9BXC9 721 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 DHX35Q9H5Z1 703 aaKnown RBP13.25□□□□□ -0.29
SHMT2-227ENST00000557269 TRPV5Q9NQA5 729 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 MARK1Q9P0L2 795 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 OR12D3Q9UGF7 316 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 AP4E1Q9UPM8 1137 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 IGLV3-10A0A075B6K4 115 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 DRGXA6NNA5 263 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 E9PAM4 449 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 F5H5T6 163 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 TRIM24O15164 1050 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 SPOPO43791 374 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 TBL1XO60907 577 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 CNTN5O94779 1100 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 LRIG2O94898 1065 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 FTCDO95954 541 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 CD48P09326 243 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 ADH5P11766 374 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 TYRP14679 529 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 HOXD9P28356 352 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-227ENST00000557269 L1CAMP32004 1257 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 ARSEP51690 589 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 AIF1P55008 147 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 MESP2Q0VG99 397 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 C5orf22Q49AR2 442 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 SLC44A4Q53GD3 710 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 BOLA3Q53S33 107 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 ALFQ53S48 1182 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 TXNDC11Q6PKC3 985 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 NT5DC3Q86UY8 548 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 KIAA1524Q8TCG1 905 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 CSGALNACT1Q8TDX6 532 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 DDI1Q8WTU0 396 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 KRT35Q92764 455 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 DNASE1L2Q92874 299 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 NCAPGQ9BPX3 1015 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 DDX50Q9BQ39 737 aaKnown RBP13.24□□□□□ -0.29
SHMT2-227ENST00000557269 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHMT2-227ENST00000557269 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.24□□□□□ -0.29
SHMT2-227ENST00000557269 MPP6Q9NZW5 540 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 STIM2Q9P246 746 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 MYOFQ9NZM1 2061 aa13.24□□□□□ -0.29
SHMT2-227ENST00000557269 HOXC11O43248 304 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ZSCAN12O43309 604 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 CREB3O43889 395 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ADH1CP00326 375 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 IL4RP24394 825 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 OPRD1P41143 372 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 NRG1Q02297 640 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 GAD2Q05329 585 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 MTA1Q13330 715 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 DPYSL2Q16555 572 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 IFI16Q16666 785 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 HADHQ16836 314 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 MPPE1Q53F39 396 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 RNF43Q68DV7 783 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ASTLQ6HA08 431 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ANKS1BQ7Z6G8 1248 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 PSTKQ8IV42 348 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ETFBKMTQ8IXQ9 262 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 WFDC5Q8TCV5 224 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 TEKT4Q8WW24 435 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 RAPGEF5Q92565 580 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 CALR3Q96L12 384 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 RPRD1AQ96P16 312 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 PCDH18Q9HCL0 1135 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 FBRSL1Q9HCM7 1045 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 CWC15Q9P013 229 aaKnown RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 ZNF212Q9UDV6 495 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 CA14Q9ULX7 337 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 PACSIN2Q9UNF0 486 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-227ENST00000557269 PIAS3Q9Y6X2 628 aa13.23□□□□□ -0.29
SHMT2-227ENST00000557269 KRBA1A5PL33 1030 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 C3orf70A6NLC5 250 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-227ENST00000557269 SPECC1L-ADORA2AF8WAN1 911 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 PI4K2BG5E9Z4 385 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 CACNG3O60359 315 aa13.22□□□□□ -0.29
SHMT2-227ENST00000557269 SLC34A2O95436 690 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms