RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 hCG_2014768A0A024R1R8 64 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 FAM237BA0A1B0GVD1 139 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 MCF2LO15068 1137 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 BIRC5O15392 142 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 LPXNO60711 386 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 AVILO75366 819 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 DHRS4L1P0CG22 281 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 ADARP55265 1226 aaKnown RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 OXCT1P55809 520 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 IRX4P78413 519 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 BASP1P80723 227 aaKnown RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 HIC1Q14526 733 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 DARS2Q6PI48 645 aaKnown RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 PLD5Q8N7P1 536 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 CLEC4CQ8WTT0 213 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 GFM2Q969S9 779 aaKnown RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 SLC10A4Q96EP9 437 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 RNF157Q96PX1 679 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 OXCT2Q9BYC2 517 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 FAM49AQ9H0Q0 323 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-207ENST00000553837 SNX9Q9Y5X1 595 aa12.61□□□□□ -0.39
SHMT2-207ENST00000553837 GOLGA8RI6L899 631 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 KLF11O14901 512 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 VILLO15195 856 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PAPSS1O43252 624 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 OR6B1O95007 311 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 MT-ND3P03897 115 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ATP5BP06576 529 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ATXN1P54253 815 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ANKRD20A4Q4UJ75 823 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 SFT2D3Q587I9 215 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 SCYL2Q6P3W7 929 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ALYREFQ86V81 257 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 FBXO27Q8NI29 283 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ZC3H15Q8WU90 426 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 SLC35F5Q8WV83 523 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 DCAKDQ8WVC6 231 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 CLPTM1LQ96KA5 538 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PRICKLE1Q96MT3 831 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PAFAH2Q99487 392 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 SLC4A5Q9BY07 1137 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ACSS3Q9H6R3 686 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PPARGC1AQ9UBK2 798 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 C2orf71A6NGG8 1288 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 GPR32O75388 356 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 HOXD8P13378 290 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 NAT1P18440 290 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 BGNP21810 368 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ELK3P41970 407 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ROR1Q01973 937 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 KDSRQ06136 332 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 KCNJ11Q14654 390 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ZBTB6Q15916 424 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 UGT2A3Q6UWM9 527 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 RBM44Q6ZP01 1051 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 TREML1Q86YW5 311 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PCDH19Q8TAB3 1148 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 BRI3BPQ8WY22 251 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 SNX27Q96L92 541 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 KLF6Q99612 283 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 WWP1Q9H0M0 922 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 ZNF408Q9H9D4 720 aa12.6□□□□□ -0.39
SHMT2-207ENST00000553837 NGRNQ9NPE2 291 aaKnown RBP12.6□□□□□ -0.39
SHMT2-207ENST00000553837 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 PRPSAP2O60256 369 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 HNRNPCP07910 306 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 CD97P48960 835 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 ERFP50548 548 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 HDAC4P56524 1084 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 MSLNQ13421 630 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 KYAT1Q16773 422 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 SOWAHAQ2M3V2 549 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 DUSP28Q4G0W2 176 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 EFHC1Q5JVL4 640 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 FAXCQ5TGI0 409 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 TMEM110Q86TL2 294 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 PRPF39Q86UA1 669 aaKnown RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 MAP7D3Q8IWC1 876 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 NPLOC4Q8TAT6 608 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 GDPD5Q8WTR4 605 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 TTC17Q96AE7 1141 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 BTBD9Q96Q07 612 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 SNRNP25Q9BV90 132 aaKnown RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 NXF3Q9H4D5 531 aaKnown RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 KIAA1257Q9ULG3 409 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 KAT6AQ92794 2004 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 H7C0C1 242 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 I3L4J1 428 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 DPYSL4O14531 572 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 PEX1O43933 1283 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 CLPTM1O96005 669 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 ALOX15P16050 662 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-207ENST00000553837 RBL1P28749 1068 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 ETV4P43268 484 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 ATP5OP48047 213 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 CLCN2P51788 898 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 CCNA1P78396 465 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 SLC6A3Q01959 620 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 CDK18Q07002 472 aa12.59□□□□□ -0.39
SHMT2-207ENST00000553837 DCTN2Q13561 401 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms