RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 EPHB1P54762 984 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 WASHC5Q12768 1159 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 LRRC36Q1X8D7 754 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 RABGAP1LQ5R372 815 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 MARCH8Q5T0T0 291 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 OR52E8Q6IFG1 317 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 IRGCQ6NXR0 463 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 TAPT1Q6NXT6 567 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 IZUMO2Q6UXV1 221 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 RNF111Q6ZNA4 994 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 MARK2Q7KZI7 788 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 REM2Q8IYK8 340 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 HACE1Q8IYU2 909 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 TNS4Q8IZW8 715 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 DEFB106AQ8N104 65 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 PLD6Q8N2A8 252 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 NLGN2Q8NFZ4 835 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 AGR3Q8TD06 166 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 SLC2A14Q8TDB8 520 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF483Q8TF39 744 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 TFB1MQ8WVM0 346 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 KBTBD7Q8WVZ9 684 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 PYDC1Q8WXC3 89 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 CENPIQ92674 756 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 P2RY11Q96G91 374 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 AGAP3Q96P47 875 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 OLFM3Q96PB7 478 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 MPHOSPH6Q99547 160 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF184Q99676 751 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 C16orf70Q9BSU1 422 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 FAM49AQ9H0Q0 323 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 NXF3Q9H4D5 531 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 CYP4F11Q9HBI6 524 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF212Q9UDV6 495 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 DICER1Q9UPY3 1922 aaKnown RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 A0A0A0MRY4 1105 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 LOC100653049A0A140TA62 436 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ARHGAP42A6NI28 874 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 KCNK1O00180 336 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 BIRC5O15392 142 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 MAP3K7O43318 606 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 CREB3O43889 395 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SIN3BO75182 1162 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 KRT34O76011 436 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 BEST1O76090 585 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ALDH1A2O94788 518 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 STAU1O95793 577 aaKnown RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SLC25A27O95847 323 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ITGA2BP08514 1039 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 GSTA2P09210 222 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ZCCHC18P0CG32 403 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SKIP12755 728 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 HOXA11P31270 313 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 GRM5P41594 1212 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 PTPN9P43378 593 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SERPINB9P50453 376 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ACTR3P61158 418 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 USP4Q13107 963 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 OTUD1Q5VV17 481 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 RAPH1Q70E73 1250 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SLC26A9Q7LBE3 791 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 NET1Q7Z628 596 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 MYLK4Q86YV6 388 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SULF1Q8IWU6 871 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 ARHGAP24Q8N264 748 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 CCNYQ8ND76 341 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 HIPK4Q8NE63 616 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SPDYE1Q8NFV5 336 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 FAM149B1Q96BN6 582 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 CCDC124Q96CT7 223 aaKnown RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 PGBD4Q96DM1 585 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 SPATA13Q96N96 652 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 FCRL3Q96P31 734 aaPredicted RBP7.71□□□□□ -1.18
LIMA1-213ENST00000552720 CAB39LQ9H9S4 337 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 MAN1C1Q9NR34 630 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 PACSIN3Q9UKS6 424 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 PPP2R3BQ9Y5P8 575 aa7.71□□□□□ -1.18
LIMA1-213ENST00000552720 DOCK3Q8IZD9 2030 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 LTBP3Q9NS15 1303 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 H3BRB1 525 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CLDN5O00501 218 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 BAG6P46379 1132 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 NDUFV1P49821 464 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 SULT1E1P49888 294 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 IDH3AP50213 366 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CACNA2D1P54289 1103 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 POU5F1BQ06416 359 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ADIGQ0VDE8 80 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ITGA9Q13797 1035 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 DLG2Q15700 870 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 STEAP4Q687X5 459 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 TIFABQ6ZNK6 161 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ARCQ7LC44 396 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CTU1Q7Z7A3 348 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 CCNJLQ8IV13 435 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 WDR75Q8IWA0 830 aaKnown RBP7.7□□□□□ -1.18
LIMA1-213ENST00000552720 ZNF567Q8N184 647 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 PHTF2Q8N3S3 785 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 NME8Q8N427 588 aa7.7□□□□□ -1.18
LIMA1-213ENST00000552720 RNF169Q8NCN4 708 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms