RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ATP5BP06576 529 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 PNMA6AP0CW24 399 aaPredicted RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 POLR2EP19388 210 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 MAOBP27338 520 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 TPMTP51580 245 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 ATXN3P54252 364 aaPredicted RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 YWHAZP63104 245 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 PITX1P78337 314 aaPredicted RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 PTK2Q05397 1052 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 TAF5Q15542 800 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 PTPRNQ16849 979 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 VWA3BQ502W6 1294 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 ZC3H12AQ5D1E8 599 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 MS4A13Q5J8X5 152 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 SYCP2LQ5T4T6 812 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 SH3PXD2AQ5TCZ1 1133 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 RABEPKQ7Z6M1 372 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 CFAP52Q8N1V2 620 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 CARNMT1Q8N4J0 409 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 WDTC1Q8N5D0 677 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 OR2T3Q8NH03 318 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 FOXJ1Q92949 421 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 PPP1R13BQ96KQ4 1090 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 CPXM1Q96SM3 734 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 TUBGCP2Q9BSJ2 902 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 GTPBP2Q9BX10 602 aaKnown RBP16.94■□□□□ 0.3
VPS29-207ENST00000549970 TMEM245Q9H330 911 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 NDST4Q9H3R1 872 aa16.94■□□□□ 0.3
VPS29-207ENST00000549970 MEI4A8MW99 385 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 FOXN3O00409 490 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 PES1O00541 588 aaKnown RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 SERPINF2P08697 491 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 DLDP09622 509 aaKnown RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 ERCC5P28715 1186 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 GFPT1Q06210 699 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 CAMK2GQ13555 558 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 CDH18Q13634 790 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 DCAF6Q58WW2 860 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 MIIPQ5JXC2 388 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 RAP1GAP2Q684P5 730 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 FAM124AQ86V42 546 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 SLC47A2Q86VL8 602 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 CHSY1Q86X52 802 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 CCDC117Q8IWD4 279 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 LGI2Q8N0V4 545 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 ZNF557Q8N988 423 aaPredicted RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 C1orf131Q8NDD1 294 aaKnown RBP16.93■□□□□ 0.3
VPS29-207ENST00000549970 FIBINQ8TAL6 211 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 FAM204AQ9H8W3 233 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 CAPN10Q9HC96 672 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 PCDHGC3Q9UN70 934 aa16.93■□□□□ 0.3
VPS29-207ENST00000549970 SYNJ2BP-COX16A0A087WUM0 186 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 GRAP2O75791 330 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 IGLV3-25P01717 112 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 OXTRP30559 389 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 KRT9P35527 623 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 PLEKHG6Q3KR16 790 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 WDR45BQ5MNZ6 344 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 MMS22LQ6ZRQ5 1243 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 FAM183BPQ6ZVS7 135 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 DEFB106AQ8N104 65 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 LMLNQ96KR4 655 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 NOX5Q96PH1 765 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 LHX5Q9H2C1 402 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 PLCB1Q9NQ66 1216 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 COX16Q9P0S2 106 aa16.92■□□□□ 0.3
VPS29-207ENST00000549970 PCDH15Q96QU1 1955 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 LUC7L3O95232 432 aaKnown RBP16.91■□□□□ 0.3
VPS29-207ENST00000549970 ERBB2P04626 1255 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 GNSP15586 552 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 TACR2P21452 398 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 PMLP29590 882 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 CLCN1P35523 988 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 CSKP41240 450 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 CDK17Q00537 523 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 ZNF252P-AS1Q0IIN9 211 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 RAPGEF1Q13905 1077 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 KCNJ12Q14500 433 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 FSCBQ5H9T9 825 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 EFHC1Q5JVL4 640 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 DCAF12L1Q5VU92 463 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 OR6B2Q6IFH4 312 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 HDDC3Q8N4P3 179 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 ATP6V0D2Q8N8Y2 350 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 DEFB124Q8NES8 71 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 OR2I1PQ8NGU4 316 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 BTN2A3PQ96KV6 586 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 SLC2A13Q96QE2 648 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 NUP58Q9BVL2 599 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 MIR1-1HGQ9H1L0 117 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 MTG2Q9H4K7 406 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 SYNCQ9H7C4 482 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 PRSS16Q9NQE7 514 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 SAMSN1Q9NSI8 373 aaKnown RBP16.91■□□□□ 0.3
VPS29-207ENST00000549970 LMBRD1Q9NUN5 540 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 DDIT4Q9NX09 232 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 SUSD2Q9UGT4 822 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 INTS6Q9UL03 887 aaKnown RBP16.91■□□□□ 0.3
VPS29-207ENST00000549970 NUMA1Q14980 2115 aa16.91■□□□□ 0.3
VPS29-207ENST00000549970 ACACBO00763 2458 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms