RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 RARAP10276 462 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 ITPRIPL2Q3MIP1 535 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 ATP13A4Q4VNC1 1196 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 BOLA3Q53S33 107 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 CSGALNACT1Q8TDX6 532 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 BBS2Q9BXC9 721 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 IRX2Q9BZI1 471 aaPredicted RBP21.9■■□□□ 1.1
VPS29-206ENST00000549578 OSBPL2Q9H1P3 480 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 SLC2A4RGQ9NR83 387 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 COL4A2P08572 1712 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 E9PAM4 449 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 NEDD8-MDP1E9PL57 170 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 SRGAP2O75044 1071 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 ADH1CP00326 375 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 ADH5P11766 374 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 IRAK1P51617 712 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 RPS24P62847 133 aaKnown RBP21.9■■□□□ 1.1
VPS29-206ENST00000549578 ARTNQ5T4W7 220 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 IER5LQ5T953 404 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 ZNF683Q8IZ20 524 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 CCAR2Q8N163 923 aaKnown RBP21.9■■□□□ 1.1
VPS29-206ENST00000549578 CFAP52Q8N1V2 620 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 DDI1Q8WTU0 396 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 TEKT4Q8WW24 435 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 DNASE1L2Q92874 299 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 IGSF8Q969P0 613 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 TMA16Q96EY4 203 aaKnown RBP21.9■■□□□ 1.1
VPS29-206ENST00000549578 RPRD1AQ96P16 312 aaPredicted RBP21.9■■□□□ 1.1
VPS29-206ENST00000549578 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.9■■□□□ 1.1
VPS29-206ENST00000549578 KLHL11Q9NVR0 708 aa21.9■■□□□ 1.1
VPS29-206ENST00000549578 CYBBP04839 570 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 SOX9P48436 509 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 MPPE1Q53F39 396 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 FYB2Q5VWT5 728 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 CIR1Q86X95 450 aaPredicted RBP21.89■■□□□ 1.09
VPS29-206ENST00000549578 PSTKQ8IV42 348 aaKnown RBP21.89■■□□□ 1.09
VPS29-206ENST00000549578 TRIM44Q96DX7 344 aaPredicted RBP21.89■■□□□ 1.09
VPS29-206ENST00000549578 KCTD15Q96SI1 283 aaPredicted RBP21.89■■□□□ 1.09
VPS29-206ENST00000549578 TRPV5Q9NQA5 729 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 HEBP1Q9NRV9 189 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 MARK1Q9P0L2 795 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 STIM2Q9P246 746 aa21.89■■□□□ 1.09
VPS29-206ENST00000549578 TRIOO75962 3097 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 CREB3O43889 395 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 TBL1XO60907 577 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 LRIG2O94898 1065 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 FTCDO95954 541 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 KRT7P08729 469 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 TYRP14679 529 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 L1CAMP32004 1257 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 PFKPQ01813 784 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 GAD2Q05329 585 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 NR1H3Q13133 447 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 GAB4Q2WGN9 574 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 PPP6R3Q5H9R7 873 aaPredicted RBP21.88■■□□□ 1.09
VPS29-206ENST00000549578 ACBD5Q5T8D3 534 aaPredicted RBP21.88■■□□□ 1.09
VPS29-206ENST00000549578 MANEALQ5VSG8 457 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 LRRC31Q6UY01 552 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 RHOT1Q8IXI2 618 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 SYCE1Q8N0S2 351 aa21.88■■□□□ 1.09
VPS29-206ENST00000549578 C17orf53Q8N3J3 647 aaPredicted RBP21.88■■□□□ 1.09
VPS29-206ENST00000549578 HJURPQ8NCD3 748 aaPredicted RBP21.88■■□□□ 1.09
VPS29-206ENST00000549578 HOXC11O43248 304 aaPredicted RBP21.87■■□□□ 1.09
VPS29-206ENST00000549578 PENKP01210 267 aaPredicted RBP21.87■■□□□ 1.09
VPS29-206ENST00000549578 HOXD9P28356 352 aaPredicted RBP21.87■■□□□ 1.09
VPS29-206ENST00000549578 GJA4P35212 333 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 MARCKSL1P49006 195 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 NRG1Q02297 640 aaPredicted RBP21.87■■□□□ 1.09
VPS29-206ENST00000549578 SEMA3BQ13214 749 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 RABGAP1LQ5R372 815 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 ZFYVE27Q5T4F4 411 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 POLNQ7Z5Q5 900 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 NT5DC3Q86UY8 548 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 NAT16Q8N8M0 369 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 CD101Q93033 1021 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 CHFRQ96EP1 664 aa21.87■■□□□ 1.09
VPS29-206ENST00000549578 DPYSL2Q16555 572 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 LRRC38Q5VT99 294 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 NAIF1Q69YI7 327 aaPredicted RBP21.86■■□□□ 1.09
VPS29-206ENST00000549578 RWDD4Q6NW29 188 aaKnown RBP21.86■■□□□ 1.09
VPS29-206ENST00000549578 PEX26Q7Z412 305 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 C12orf40Q86WS4 652 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 KRT35Q92764 455 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 ALS2CR12Q96Q35 445 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 EPAS1Q99814 870 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 MPP6Q9NZW5 540 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 PACSIN2Q9UNF0 486 aaPredicted RBP21.86■■□□□ 1.09
VPS29-206ENST00000549578 NEU3Q9UQ49 428 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 PIAS3Q9Y6X2 628 aa21.86■■□□□ 1.09
VPS29-206ENST00000549578 IGLV3-10A0A075B6K4 115 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 TYW5A2RUC4 315 aaKnown RBP21.85■■□□□ 1.09
VPS29-206ENST00000549578 PSTPIP1O43586 416 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 CNTN5O94779 1100 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 CD48P09326 243 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 CDH6P55285 790 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 KRT81Q14533 505 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 C5orf22Q49AR2 442 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 ALFQ53S48 1182 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 HS1BP3Q53T59 392 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 UBALD2Q8IYN6 164 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms