RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 GRIN2DO15399 1336 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CDK5RAP2Q96SN8 1893 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 LRRC37AA6NMS7 1700 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 AGPSO00116 658 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ESRRAP11474 423 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 SYN1P17600 705 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 GPC1P35052 558 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SKP1P63208 163 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 XRCC4Q13426 336 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 HLA-DQA1Q5Y7H0 255 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 CDCA2Q69YH5 1023 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 TIGD7Q6NT04 549 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 C17orf99Q6UX52 265 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 TRPM8Q7Z2W7 1104 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ZNF677Q86XU0 584 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 RBM12BQ8IXT5 1001 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 KRT78Q8N1N4 520 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SMARCD1Q96GM5 515 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.82□□□□□ -1
CLIP1-218ENST00000545889 ITGA11Q9UKX5 1188 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SMCHD1A6NHR9 2005 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SUPT3HB4E1H0 165 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 GSTT1P30711 240 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 OR1E1P30953 314 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 CARSP49589 748 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 C21orf59P57076 290 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 BST2Q10589 180 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 ACOX1Q15067 660 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 NUGGCQ68CJ6 796 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 DOK6Q6PKX4 331 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SLFN11Q7Z7L1 901 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 LINC00523Q86TU6 105 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 NUDCD3Q8IVD9 361 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SLC20A1Q8WUM9 679 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 TRIB2Q92519 343 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 KAT5Q92993 513 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SERPINB11Q96P15 392 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ZC3H7BQ9UGR2 993 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 RWDD3Q9Y3V2 267 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 A0A0G2JND7 137 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 C1QTNF3-AMACRE9PGA6 284 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SCAMP3O14828 347 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 IGSF6O95976 241 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 SERPINF2P08697 491 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 NQO1P15559 274 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 BDNFP23560 247 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 BLVRAP53004 296 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 PTENP60484 403 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 POLR2LP62875 67 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 PTPN11Q06124 597 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 DMPKQ09013 629 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 MAPK7Q13164 816 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 KRT72Q14CN4 511 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 HECTD3Q5T447 861 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 DENND5BQ6ZUT9 1274 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 DDX42Q86XP3 938 aaKnown RBP eCLIP8.82□□□□□ -1
CLIP1-218ENST00000545889 SPATA4Q8NEY3 305 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 FLCNQ8NFG4 579 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 AGR3Q8TD06 166 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ZNF296Q8WUU4 475 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 TRIM15Q9C019 465 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 DDX47Q9H0S4 455 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 PAK5Q9P286 719 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 PACSIN2Q9UNF0 486 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 TRIM33Q9UPN9 1127 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 NRXN2Q9P2S2 1712 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 EPHB6O15197 1021 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 TRIM16O95361 564 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ETS2P15036 469 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 HTR1BP28222 390 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 MARSP56192 900 aaKnown RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 CBX3Q13185 183 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 EFTUD2Q15029 972 aaKnown RBP eCLIP8.82□□□□□ -1
CLIP1-218ENST00000545889 TMEM259Q4ZIN3 620 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 TAPT1Q6NXT6 567 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 MTSS1LQ765P7 747 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 GET4Q7L5D6 327 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 TFAP2DQ7Z6R9 452 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 C10orf53Q8N6V4 93 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 PHC3Q8NDX5 983 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ZNF669Q96BR6 464 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 FAR2Q96K12 515 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ZNF570Q96NI8 536 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 C2orf49Q9BVC5 232 aaPredicted RBP8.82□□□□□ -1
CLIP1-218ENST00000545889 MLXIPLQ9NP71 852 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 MARCH2Q9P0N8 246 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 ST3GAL5Q9UNP4 418 aa8.82□□□□□ -1
CLIP1-218ENST00000545889 MTA2O94776 668 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 CALCAP01258 141 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 POLBP06746 335 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 ARF4P18085 180 aaPredicted RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 PTPN3P26045 913 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SOAT1P35610 550 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 RAP1GAPP47736 663 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 GALCP54803 685 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SH3BGRP55822 239 aaPredicted RBP8.81□□□□□ -1
CLIP1-218ENST00000545889 KCNJ2P63252 427 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 SKOR1P84550 965 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 AAK1Q2M2I8 961 aa8.81□□□□□ -1
CLIP1-218ENST00000545889 ZPBP2Q6X784 338 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms