RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 ADAM32Q8TC27 787 aa12.24□□□□□ -0.45
HDAC4-216ENST00000544989 PGAP3Q96FM1 320 aaPredicted RBP12.24□□□□□ -0.45
HDAC4-216ENST00000544989 TPSD1Q9BZJ3 242 aa12.24□□□□□ -0.45
HDAC4-216ENST00000544989 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.24□□□□□ -0.45
HDAC4-216ENST00000544989 MYO6Q9UM54 1294 aa12.24□□□□□ -0.45
HDAC4-216ENST00000544989 STON1Q9Y6Q2 735 aa12.24□□□□□ -0.45
HDAC4-216ENST00000544989 A0A1W2PQF6 199 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 MAP3K13O43283 966 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 AP5Z1O43299 807 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 ASLP04424 464 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 DLDP09622 509 aaKnown RBP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 HLA-FP30511 346 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 SLC6A4P31645 630 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 NOMO3P69849 1222 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 SPEM2Q0P670 501 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 SLC12A1Q13621 1099 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 PUM1Q14671 1186 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 TAF5Q15542 800 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 BRMS1LQ5PSV4 323 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 FAM102AQ5T9C2 384 aaPredicted RBP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 PMS2CLQ68D20 193 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 NADSYN1Q6IA69 706 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 SERPINA13PQ6UXR4 307 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 CHST9Q7L1S5 443 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 LPCAT2Q7L5N7 544 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 METTL3Q86U44 580 aaKnown RBP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 CHSY1Q86X52 802 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 KDM1BQ8NB78 822 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 DUSP15Q9H1R2 295 aaPredicted RBP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 HSD3B7Q9H2F3 369 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 NLRC4Q9NPP4 1024 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 VPS45Q9NRW7 570 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 SEMA4GQ9NTN9 838 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 ABCB8Q9NUT2 735 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 CACNA2D2Q9NY47 1150 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 NOCTQ9UK39 431 aaKnown RBP12.23□□□□□ -0.45
HDAC4-216ENST00000544989 HCN2Q9UL51 889 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 ASPMQ8IZT6 3477 aa12.23□□□□□ -0.45
HDAC4-216ENST00000544989 CEP295Q9C0D2 2601 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 GOLGA6L7A0A1B0GV03 622 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 H0Y626 953 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 M0QYT0 321 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 GRAP2O75791 330 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 LUC7L3O95232 432 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 CYP1A1P04798 512 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 MMEP08473 750 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 ZNF806P0C7X5 589 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 FERP16591 822 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 GABRG2P18507 467 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 TACR2P21452 398 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 HOXD12P35452 270 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 NSFP46459 744 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 KLK7P49862 253 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 ST8SIA6P61647 398 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 ZNF234Q14588 700 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 SLC25A52Q3SY17 297 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 FNDC3BQ53EP0 1204 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 NAA35Q5VZE5 725 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 MBLAC2Q68D91 279 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 APTXQ7Z2E3 356 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 DGLUCYQ7Z3D6 616 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 RABEPKQ7Z6M1 372 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 XYLT1Q86Y38 959 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 DHX40Q8IX18 779 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 LGI2Q8N0V4 545 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 C12orf50Q8NA57 414 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 NETO1Q8TDF5 533 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 CPA5Q8WXQ8 436 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 NT5C3BQ969T7 300 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 P2RY11Q96G91 374 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 ACOX2Q99424 681 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 NUCKS1Q9H1E3 243 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 RTN4Q9NQC3 1192 aaKnown RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 CALCOCO1Q9P1Z2 691 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 KIAA1522Q9P206 1035 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-216ENST00000544989 STIM2Q9P246 746 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 SUN2Q9UH99 717 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 CLEC4EQ9ULY5 219 aa12.22□□□□□ -0.45
HDAC4-216ENST00000544989 ZZEF1O43149 2961 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 SDK1Q7Z5N4 2213 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 SYNJ2BP-COX16A0A087WUM0 186 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 A0A1B0GVM2 712 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 A0A1W2PQC6 194 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 BCLAF3A2AJT9 711 aaKnown RBP12.21□□□□□ -0.45
HDAC4-216ENST00000544989 ANTXRLA6NF34 631 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 TCAF2A6NFQ2 919 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 EPHB6O15197 1021 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 KRT37O76014 449 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 CALB1P05937 261 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 EPHX1P07099 455 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 ATP1A3P13637 1013 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 DESP17661 470 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 NDUFV2P19404 249 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 TGM1P22735 817 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 MMP8P22894 467 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 OXTRP30559 389 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 HOXC13P31276 330 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 MPLP40238 635 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 IL12RB1P42701 662 aa12.21□□□□□ -0.45
HDAC4-216ENST00000544989 WASP42768 502 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms