RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ALOX15BO15296 676 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 RTN3O95197 1032 aaPredicted RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 HMBSP08397 361 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 MYZAPP0CAP1 466 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 HMGA1P17096 107 aaKnown RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 CCR1P32246 355 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 GRIA1P42261 906 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 IFI35P80217 286 aaPredicted RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 PPP2R5DQ14738 602 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 KIAA1841Q6NSI8 718 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 HOOK3Q86VS8 718 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 MIB1Q86YT6 1006 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 ARHGAP12Q8IWW6 846 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 ZBED8Q8IZ13 594 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF683Q8IZ20 524 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 C2orf15Q8WU43 125 aaKnown RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 TMEM169Q96HH4 297 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 HAPLN3Q96S86 360 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 YME1L1Q96TA2 773 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 GORASP1Q9BQQ3 440 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 TRIM62Q9BVG3 475 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 TTLL2Q9BWV7 592 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 MPP6Q9NZW5 540 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 SEPT10Q9P0V9 454 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 AFF4Q9UHB7 1163 aaKnown RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 ZMYND8Q9ULU4 1186 aaPredicted RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 NOVA2Q9UNW9 492 aaKnown RBP12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 PLXNA4Q9HCM2 1894 aa12.64□□□□□ -0.39
AP003559.1-201ENST00000540906 MYO18AQ92614 2054 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 HACD1B0YJ81 288 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 E7ESA3 106 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 KCNK1O00180 336 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 PIAS1O75925 651 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 LAG3P18627 525 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 GCAP28676 217 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 HOXC13P31276 330 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 ATP1A2P50993 1020 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 TBX4P57082 545 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 RPL10AP62906 217 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 GABPB1Q06547 395 aaPredicted RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 GALNT2Q10471 571 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 SMARCB1Q12824 385 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 AUHQ13825 339 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 HIF1AQ16665 826 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 BBS9Q3SYG4 887 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 ANKRD20A2Q5SQ80 823 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 ANKRD20A1Q5TYW2 823 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 ANKRD20A3Q5VUR7 823 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 HEATR6Q6AI08 1181 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 RWDD4Q6NW29 188 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 SPRED2Q7Z698 418 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 PCGF5Q86SE9 256 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 DDX53Q86TM3 631 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 CAND1Q86VP6 1230 aaKnown RBP12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF567Q8N184 647 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 CCNYQ8ND76 341 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 FAM76AQ8TAV0 307 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 TLCD1Q96CP7 247 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 SERPINB11Q96P15 392 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 EPAS1Q99814 870 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 TMEM109Q9BVC6 243 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 FOXP3Q9BZS1 431 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 PLAC1Q9HBJ0 212 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 CLIC5Q9NZA1 410 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 SPG21Q9NZD8 308 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 TLR6Q9Y2C9 796 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 YIPF1Q9Y548 306 aa12.63□□□□□ -0.39
AP003559.1-201ENST00000540906 A0A0A0MRY4 1105 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SLC12A8A0AV02 714 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 LCHNA4D1U4 455 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 E9PAM4 449 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CHADO15335 359 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 BAIAP3O94812 1187 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 GJB5O95377 273 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SPATA31D3P0C874 917 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 MAGEA6P43360 314 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 EIF3BP55884 814 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ZBTB17Q13105 803 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 OLIG2Q13516 323 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 EFTUD2Q15029 972 aaKnown RBP eCLIP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 PDK1Q15118 436 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 C10orf120Q5SQS8 335 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 AGBL2Q5U5Z8 902 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 TTC19Q6DKK2 380 aaPredicted RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SPATA31D4Q6ZUB0 917 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CYP4X1Q8N118 509 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 VPS52Q8N1B4 723 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF461Q8TAF7 563 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ZSCAN18Q8TBC5 510 aaPredicted RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 DPF3Q92784 378 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 ZNF419Q96HQ0 510 aaPredicted RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SPATA13Q96N96 652 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 SERPINB12Q96P63 405 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 TRIM56Q9BRZ2 755 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 OXCT2Q9BYC2 517 aaPredicted RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 TSPYL1Q9H0U9 437 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 CYP4F11Q9HBI6 524 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 TLR8Q9NR97 1041 aaKnown RBP12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 MARCH2Q9P0N8 246 aa12.62□□□□□ -0.39
AP003559.1-201ENST00000540906 GOLGA6L7A0A1B0GV03 622 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms