RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 SUSD3Q96L08 255 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 COLEC11Q9BWP8 271 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 COX16Q9P0S2 106 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 B3GAT3O94766 335 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 STK10O94804 968 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 ERCC2P18074 760 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 SARNPP82979 210 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 CTU1Q7Z7A3 348 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 CHSY1Q86X52 802 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 ZNF567Q8N184 647 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 ADAM32Q8TC27 787 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 LRRC8CQ8TDW0 803 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 RXFP1Q9HBX9 757 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 TRMT13Q9NUP7 481 aaKnown RBP14.19□□□□□ -0.14
RTN3-210ENST00000540798 SLC17A7Q9P2U7 560 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 IKBKGQ9Y6K9 419 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 PLXNA3P51805 1871 aa14.19□□□□□ -0.14
RTN3-210ENST00000540798 CABYRO75952 493 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 TYMPP19971 482 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 SF3A3Q12874 501 aaKnown RBP eCLIP14.18□□□□□ -0.14
RTN3-210ENST00000540798 ITGA7Q13683 1181 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 DCLRE1AQ6PJP8 1040 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 LRRTM3Q86VH5 581 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 GBP7Q8N8V2 638 aaPredicted RBP14.18□□□□□ -0.14
RTN3-210ENST00000540798 ANKLE1Q8NAG6 615 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 DPF3Q92784 378 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 RMDN2Q96LZ7 410 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 GORASP1Q9BQQ3 440 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 DMAP1Q9NPF5 467 aaPredicted RBP14.18□□□□□ -0.14
RTN3-210ENST00000540798 NCAM2O15394 837 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 CSH1P0DML2 217 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 CSH2P0DML3 217 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 PPIDQ08752 370 aaKnown RBP14.18□□□□□ -0.14
RTN3-210ENST00000540798 AP1B1Q10567 949 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 FBXW10Q5XX13 1052 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 HOMEZQ8IX15 550 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 TP53INP2Q8IXH6 220 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 ARNTL2Q8WYA1 636 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 BRD8Q9H0E9 1235 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 SLCO1B3Q9NPD5 702 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 RGS18Q9NS28 235 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 DDIT4Q9NX09 232 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 RNF186Q9NXI6 227 aa14.18□□□□□ -0.14
RTN3-210ENST00000540798 MYO16Q9Y6X6 1858 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 SNRPAP09012 282 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 BNIP1Q12981 228 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 ARL13BQ3SXY8 428 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TRMT10BQ6PF06 316 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 FAM47EQ6ZV65 393 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PPM1NQ8N819 430 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 MTBPQ96DY7 904 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 KLF6Q99612 283 aaPredicted RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 FERMT1Q9BQL6 677 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 NEU3Q9UQ49 428 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 FNDC1Q4ZHG4 1894 aaPredicted RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 HMX2A2RU54 273 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 GOLGA8RI6L899 631 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 LPXNO60711 386 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 RFPL1O75677 317 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 UBOX5O94941 541 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 ITGB1P05556 798 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 ELNP15502 786 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 BDNFP23560 247 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 MAPRE1Q15691 268 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 PDZD4Q76G19 769 aaPredicted RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 FITM2Q8N6M3 262 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 NPWQ8N729 165 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TMEM209Q96SK2 561 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TRIM56Q9BRZ2 755 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 SLC24A3Q9HC58 644 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 SLC40A1Q9NP59 571 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 KLHL14Q9P2G3 628 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 ABT1Q9ULW3 272 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 KRT37O76014 449 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 IL1BP01584 269 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PYGBP11216 843 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PTPN3P26045 913 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PSMB4P28070 264 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TPI1P60174 286 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 NIPAL4Q0D2K0 466 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 GALNT2Q10471 571 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 ARTNQ5T4W7 220 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 BSPRYQ5W0U4 402 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TIFABQ6ZNK6 161 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 TAC4Q86UU9 113 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 CCNJLQ8IV13 435 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PDCD7Q8N8D1 485 aaKnown RBP14.17□□□□□ -0.14
RTN3-210ENST00000540798 CCDC63Q8NA47 563 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 NETO2Q8NC67 525 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 SMC1BQ8NDV3 1235 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 HDAC11Q96DB2 347 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 STAMBPL1Q96FJ0 436 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 PCDHB8Q9UN66 801 aa14.17□□□□□ -0.14
RTN3-210ENST00000540798 MYO18AQ92614 2054 aaKnown RBP14.16□□□□□ -0.14
RTN3-210ENST00000540798 SDR42E2A6NKP2 422 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 TRIM49D1C9J1S8 452 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 UGT1A9O60656 530 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 PAN2Q504Q3 1202 aaKnown RBP14.16□□□□□ -0.14
RTN3-210ENST00000540798 OVOS1Q6IE37 1185 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 MARK2Q7KZI7 788 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms