RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ZBTB14O43829 449 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MAFO75444 373 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ASLP04424 464 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 UBA1P22314 1058 aaKnown RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 CYTH1Q15438 398 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 SLC9B1Q4ZJI4 515 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 JADE1Q6IE81 842 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 B3GNT6Q6ZMB0 384 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TIFABQ6ZNK6 161 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 KRT27Q7Z3Y8 459 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 C7orf31Q8N865 590 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 AKT1S1Q96B36 256 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TCF7L2Q9NQB0 619 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 RPS6KL1Q9Y6S9 549 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 B4GALT4O60513 344 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TMCC1O94876 653 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 HDAC4P56524 1084 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 BACE1P56817 501 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 NADK2Q4G0N4 442 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MAP1SQ66K74 1059 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 NIM1KQ8IY84 436 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 HACE1Q8IYU2 909 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 COLGALT1Q8NBJ5 622 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 RTP4Q96DX8 246 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 AGAP3Q96P47 875 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 PGLYRP2Q96PD5 576 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 LGMNQ99538 433 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 B3GNT5Q9BYG0 378 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MOCS1Q9NZB8 636 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF214Q9UL59 606 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TMCO1Q9UM00 188 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 PEX10O60683 326 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 APBA3O96018 575 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 GSRP00390 522 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TPSB2P20231 275 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 L1CAMP32004 1257 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 IGBP1P78318 339 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 SLC10A2Q12908 348 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TMED1Q13445 227 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TTLL12Q14166 644 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MXD4Q14582 209 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TPSAB1Q15661 275 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 PPM1LQ5SGD2 360 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 PRAMEF18Q5VWM3 479 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ILDR2Q71H61 639 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 KBTBD6Q86V97 674 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 TDRD5Q8NAT2 981 aaKnown RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ADAM32Q8TC27 787 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MOCOSQ96EN8 888 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 MRPL1Q9BYD6 325 aaKnown RBP11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ANKRD31Q8N7Z5 1873 aa11.55□□□□□ -0.56
SYNE1-237ENST00000539504 ARRB2P32121 409 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 MTTPP55157 894 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 ART3Q13508 389 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 C6orf52Q5T4I8 152 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 C4orf22Q6V702 233 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 KYQ8NBH2 561 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 OR52B2Q96RD2 323 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 PCYT2Q99447 389 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 BCO2Q9BYV7 579 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 CDT1Q9H211 546 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 TRPC5Q9UL62 973 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-237ENST00000539504 MFHAS1Q9Y4C4 1052 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 AFG3L2Q9Y4W6 797 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 ADCY6O43306 1168 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 GCATO75600 419 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 CRTAMO95727 393 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 THRAP10827 490 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 CLCN3P51790 818 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 GRM2Q14416 872 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 SLC9A4Q6AI14 798 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 KLHDC10Q6PID8 442 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 BNC2Q6ZN30 1099 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-237ENST00000539504 ATG14Q6ZNE5 492 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 HTR3CQ8WXA8 447 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 CNKSR2Q8WXI2 1034 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 SEPT1Q8WYJ6 367 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 ZNF670Q9BS34 389 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 CDH19Q9H159 772 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 C2orf40Q9H1Z8 148 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 MYOZ2Q9NPC6 264 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 PTTG2Q9NZH5 202 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 C6orf203Q9P0P8 240 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-237ENST00000539504 HESX1Q9UBX0 185 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 AP4E1Q9UPM8 1137 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 H3BNX3 289 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 DNAJA2O60884 412 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 STAG3L1P0CL83 205 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 TFE3P19532 575 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-237ENST00000539504 TNFAIP1Q13829 316 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 PMF1Q6P1K2 205 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 PAOXQ6QHF9 649 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 ACOT1Q86TX2 421 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 FLAD1Q8NFF5 587 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 TMA16Q96EY4 203 aaKnown RBP11.54□□□□□ -0.56
SYNE1-237ENST00000539504 TBCBQ99426 244 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 FERMT1Q9BQL6 677 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 RTKNQ9BST9 563 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 NT5C1AQ9BXI3 368 aa11.54□□□□□ -0.56
SYNE1-237ENST00000539504 SNX15Q9NRS6 342 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms