RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 IRAK2O43187 625 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 TNFSF14O43557 240 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 DNTTP04053 509 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 VDRP11473 427 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 CTSKP43235 329 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 GRK6P43250 576 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 CCT8P50990 548 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 SGSHP51688 502 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 YWHAEP62258 255 aaKnown RBP14.13□□□□□ -0.15
SS18-204ENST00000539244 TTC31Q49AM3 519 aaPredicted RBP14.13□□□□□ -0.15
SS18-204ENST00000539244 COBLL1Q53SF7 1204 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 PIK3R6Q5UE93 754 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 C19orf48Q6RUI8 117 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 USP30Q70CQ3 517 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 PDZD3Q86UT5 571 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 SIX6OS1Q8N1H7 587 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 GALNT15Q8N3T1 639 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 WFDC5Q8TCV5 224 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 AZIN2Q96A70 460 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 EEF2KMTQ96G04 330 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 MYO19Q96H55 970 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 LMLNQ96KR4 655 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 RSPH9Q9H1X1 276 aaPredicted RBP14.13□□□□□ -0.15
SS18-204ENST00000539244 SUN2Q9UH99 717 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 SCML1Q9UN30 329 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 BTBD3Q9Y2F9 522 aa14.13□□□□□ -0.15
SS18-204ENST00000539244 C10orf142B7Z368 130 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 SLC16A3O15427 465 aaKnown RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 MSI1O43347 362 aaKnown RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 DFNA5O60443 496 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 ZNF202O95125 648 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 TBXAS1P24557 533 aaPredicted RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 CAMK2BQ13554 666 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 ARID5BQ14865 1188 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 SMAD1Q15797 465 aaKnown RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 COL28A1Q2UY09 1125 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 FAM133BQ5BKY9 247 aaKnown RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 NUGGCQ68CJ6 796 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 ZNF776Q68DI1 518 aaPredicted RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 LCLAT1Q6UWP7 414 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 UNC45BQ8IWX7 931 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 SMYD4Q8IYR2 804 aaPredicted RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 UBA3Q8TBC4 463 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 SLC35F5Q8WV83 523 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 IRGQQ8WZA9 623 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 TTC17Q96AE7 1141 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 GOLPH3LQ9H4A5 285 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.12□□□□□ -0.15
SS18-204ENST00000539244 RAXQ9Y2V3 346 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 ZDHHC9Q9Y397 364 aa14.12□□□□□ -0.15
SS18-204ENST00000539244 COL5A1P20908 1838 aaPredicted RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 TP53BP1Q12888 1972 aaPredicted RBP14.12□□□□□ -0.15
SS18-204ENST00000539244 TBL1XO60907 577 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 GABBR2O75899 941 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 IGHV4-34P06331 123 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 PAEPP09466 180 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 CD19P15391 556 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 POLR2EP19388 210 aaKnown RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 SLC6A4P31645 630 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 CD70P32970 193 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 SLC11A2P49281 568 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 RACK1P63244 317 aaKnown RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 SOWAHCQ53LP3 525 aaPredicted RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 DCAF17Q5H9S7 520 aaPredicted RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 KCNT1Q5JUK3 1230 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 TCERG1LQ5VWI1 586 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 RFWD3Q6PCD5 774 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 KDM1BQ8NB78 822 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 ENGASEQ8NFI3 743 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 FIBINQ8TAL6 211 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 SLC35C1Q96A29 364 aa14.11□□□□□ -0.15
SS18-204ENST00000539244 SCAND2PQ9GZW5 306 aaPredicted RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 PABPC3Q9H361 631 aaKnown RBP14.11□□□□□ -0.15
SS18-204ENST00000539244 PLXNA2O75051 1894 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 A0A1W2PPC4 97 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 E9PAM4 449 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 H0Y8X5 98 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 VILLO15195 856 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 PMM2O15305 246 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 ACSL4O60488 711 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 FSBPO95073 299 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 ASLP04424 464 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 LCP1P13796 627 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 PRCPP42785 496 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 FKBP3Q00688 224 aaKnown RBP14.1□□□□□ -0.15
SS18-204ENST00000539244 NNTQ13423 1086 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 HNRNPA1L2Q32P51 320 aaKnown RBP14.1□□□□□ -0.15
SS18-204ENST00000539244 INAVAQ3KP66 663 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 KIAA0895LQ68EN5 471 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 PMF1Q6P1K2 205 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 LAYNQ6UX15 382 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 MFN1Q8IWA4 741 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 HJURPQ8NCD3 748 aaPredicted RBP14.1□□□□□ -0.15
SS18-204ENST00000539244 TFAP2BQ92481 460 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 CCDC34Q96HJ3 373 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 HSFY1Q96LI6 401 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 PRICKLE1Q96MT3 831 aaPredicted RBP14.1□□□□□ -0.15
SS18-204ENST00000539244 INTS6Q9UL03 887 aaKnown RBP14.1□□□□□ -0.15
SS18-204ENST00000539244 NCKAP1Q9Y2A7 1128 aa14.1□□□□□ -0.15
SS18-204ENST00000539244 A0A1B0GTQ1 180 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms