RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CHST9Q7L1S5 443 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 ERICH1Q86X53 443 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 ZNF677Q86XU0 584 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 XYLT1Q86Y38 959 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 LGI2Q8N0V4 545 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 CFAP52Q8N1V2 620 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 ATP6V0D2Q8N8Y2 350 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 NEK11Q8NG66 645 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 CYB5D2Q8WUJ1 264 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 CPA5Q8WXQ8 436 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 C18orf8Q96DM3 657 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 SPACA7Q96KW9 195 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 PCMTD1Q96MG8 357 aaPredicted RBP15.33■□□□□ 0.04
USP28-204ENST00000537642 FUCA2Q9BTY2 467 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 ADAM33Q9BZ11 813 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 COX16Q9P0S2 106 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 TNRC6BQ9UPQ9 1833 aaKnown RBP15.33■□□□□ 0.04
USP28-204ENST00000537642 PRR5-ARHGAP8B1AHC4 643 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 PRKCHP24723 683 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 MPLP40238 635 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 STAT1P42224 750 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 MATKP42679 507 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 RNASE9P60153 205 aaKnown RBP15.32■□□□□ 0.04
USP28-204ENST00000537642 ARHGAP8P85298 464 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 FMO1Q01740 532 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 CDR2Q01850 454 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 BYSLQ13895 437 aaKnown RBP15.32■□□□□ 0.04
USP28-204ENST00000537642 STARD3Q14849 445 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 E2F5Q15329 346 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 SF3A2Q15428 464 aaKnown RBP15.32■□□□□ 0.04
USP28-204ENST00000537642 FUT11Q495W5 492 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 C2CD6Q53TS8 623 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 NAA35Q5VZE5 725 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 MBLAC2Q68D91 279 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 CHSY1Q86X52 802 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 MFN1Q8IWA4 741 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 AHI1Q8N157 1196 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 FIBINQ8TAL6 211 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 MRGPRX1Q96LB2 322 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 SPAG5Q96R06 1193 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 NPY6RQ99463 290 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 PRMT1Q99873 361 aaKnown RBP15.32■□□□□ 0.04
USP28-204ENST00000537642 SMOC1Q9H4F8 434 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 CD93Q9NPY3 652 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 DLL3Q9NYJ7 618 aa15.32■□□□□ 0.04
USP28-204ENST00000537642 BCLAF3A2AJT9 711 aaKnown RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 TYW5A2RUC4 315 aaKnown RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 M0QYT0 321 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 ZBTB24O43167 697 aaPredicted RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 TEX33O43247 280 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 CYP1A1P04798 512 aaPredicted RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 ZNF806P0C7X5 589 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 SLC2A3P11169 496 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 HLA-EP13747 358 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 TFE3P19532 575 aaPredicted RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 CCR1P32246 355 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 SCNN1AP37088 669 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 CREB5Q02930 508 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 ARID5AQ03989 594 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 LMAN2Q12907 356 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 NME3Q13232 169 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 PTPRNQ16849 979 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 FSCBQ5H9T9 825 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 FAM102AQ5T9C2 384 aaPredicted RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 SERPINA13PQ6UXR4 307 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 CARNMT1Q8N4J0 409 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 ZNF557Q8N988 423 aaPredicted RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 RNF34Q969K3 372 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 NT5C3BQ969T7 300 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 MKRN2Q9H000 416 aaKnown RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 RRN3Q9NYV6 651 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.31■□□□□ 0.04
USP28-204ENST00000537642 SLC12A6Q9UHW9 1150 aa15.31■□□□□ 0.04
USP28-204ENST00000537642 INTS6Q9UL03 887 aaKnown RBP15.31■□□□□ 0.04
USP28-204ENST00000537642 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 IGHV1OR15-9A0A0B4J2B8 117 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 SMTNL1A8MU46 457 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 F5H5T6 163 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 MAP3K13O43283 966 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 GDF9O60383 454 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 LUC7L3O95232 432 aaKnown RBP15.3■□□□□ 0.04
USP28-204ENST00000537642 CAVIN2O95810 425 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 EPHX1P07099 455 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 ABCB4P21439 1286 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 PI4KAP42356 2102 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 DHPSP49366 369 aaPredicted RBP15.3■□□□□ 0.04
USP28-204ENST00000537642 ZNF165P49910 485 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 COPAP53621 1224 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 CDH18Q13634 790 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 PUM1Q14671 1186 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP28-204ENST00000537642 KLHL40Q2TBA0 621 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 FNDC3BQ53EP0 1204 aaKnown RBP15.3■□□□□ 0.04
USP28-204ENST00000537642 TRNP1Q6NT89 227 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 KIAA1324Q6UXG2 1013 aaKnown RBP15.3■□□□□ 0.04
USP28-204ENST00000537642 MMS22LQ6ZRQ5 1243 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 LPCAT2Q7L5N7 544 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 TMEFF1Q8IYR6 380 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 ZNF366Q8N895 744 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 MSANTD4Q8NCY6 345 aa15.3■□□□□ 0.04
USP28-204ENST00000537642 TTC17Q96AE7 1141 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms