RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PIK3R2O00459 728 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 P4HA2O15460 535 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 ACSL4O60488 711 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 TBL1XO60907 577 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 FBXO21O94952 628 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 CAPNS1P04632 268 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 ATP5BP06576 529 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 CD44P16070 742 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 BRD2P25440 801 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 CD70P32970 193 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 PPP1R2P41236 205 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 MATKP42679 507 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 RPL34P49207 117 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 SLC11A2P49281 568 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 AFF3P51826 1226 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 RPS14P62263 151 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 GCNT1Q02742 428 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 STIM1Q13586 685 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 HLA-BQ31612 363 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 NADSYN1Q6IA69 706 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 TTI2Q6NXR4 508 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 RFWD3Q6PCD5 774 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 FOXR2Q6PJQ5 311 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 DBX2Q6ZNG2 339 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 ELOA2Q8IYF1 753 aaPredicted RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 PPM1KQ8N3J5 372 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 ZNF557Q8N988 423 aaPredicted RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 CLEC4CQ8WTT0 213 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 PRICKLE1Q96MT3 831 aaPredicted RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 C6orf106Q9H6K1 298 aaPredicted RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 OSGEPQ9NPF4 335 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 TM7SF3Q9NS93 570 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 HOOK1Q9UJC3 728 aaKnown RBP11.8□□□□□ -0.52
VPS28-214ENST00000531032 PCDHGB2Q9Y5G2 931 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 SLCO1B1Q9Y6L6 691 aa11.8□□□□□ -0.52
VPS28-214ENST00000531032 ZFYVE26Q68DK2 2539 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 A0A1B0GVT2 93 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 SEMA4FO95754 770 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 FYNP06241 537 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 POLR2EP19388 210 aaKnown RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 GRIA4P48058 902 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 CSNK1EP49674 416 aaKnown RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 TBX4P57082 545 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 CETN1Q12798 172 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 NNTQ13423 1086 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 CCDC40Q4G0X9 1142 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 ZNF776Q68DI1 518 aaPredicted RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 MFN1Q8IWA4 741 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 HJURPQ8NCD3 748 aaPredicted RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 FIBINQ8TAL6 211 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 DQX1Q8TE96 717 aaKnown RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 SNX19Q92543 992 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 GOLGA1Q92805 767 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 TTC17Q96AE7 1141 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 MYO19Q96H55 970 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 FCRL2Q96LA5 508 aaPredicted RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 SERPINB11Q96P15 392 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 BTBD1Q9H0C5 482 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 SUN2Q9UH99 717 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 MAN1B1Q9UKM7 699 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 CNTN6Q9UQ52 1028 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 APOBEC2Q9Y235 224 aaKnown RBP11.79□□□□□ -0.52
VPS28-214ENST00000531032 TLR6Q9Y2C9 796 aa11.79□□□□□ -0.52
VPS28-214ENST00000531032 FLRT2O43155 660 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 DKK1O94907 266 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 CALCAP01258 141 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 DNTTP04053 509 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 BMP6P22004 513 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 GPD2P43304 727 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 RPS24P62847 133 aaKnown RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 ARID5BQ14865 1188 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 KIF19Q2TAC6 998 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 TTC31Q49AM3 519 aaPredicted RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 ISM2Q6H9L7 571 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 CCNI2Q6ZMN8 369 aaPredicted RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 USP30Q70CQ3 517 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 BEND5Q7L4P6 421 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 RRAGAQ7L523 313 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 SLCO6A1Q86UG4 719 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 PROSER1Q86XN7 944 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 ARHGEF19Q8IW93 802 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 PNPLA1Q8N8W4 532 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 KDM1BQ8NB78 822 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 SETD7Q8WTS6 366 aaKnown RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 BIRC7Q96CA5 298 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 MYEOVQ96EZ4 313 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 SLC39A13Q96H72 371 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 DDX50Q9BQ39 737 aaKnown RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 ORAI3Q9BRQ5 295 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 MIS12Q9H081 205 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 RSPH9Q9H1X1 276 aaPredicted RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 SGK2Q9HBY8 427 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 TM9SF3Q9HD45 589 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 TOR4AQ9NXH8 423 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 KIAA1522Q9P206 1035 aaPredicted RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 INTS6Q9UL03 887 aaKnown RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 DSPP15924 2871 aaKnown RBP11.78□□□□□ -0.52
VPS28-214ENST00000531032 TMEM131Q92545 1883 aa11.78□□□□□ -0.52
VPS28-214ENST00000531032 PLXNB3Q9ULL4 1909 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms