RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 UNC13DQ70J99 1090 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 SRRM1Q8IYB3 904 aaKnown RBP8.14□□□□□ -1.11
CSDE1-213ENST00000530784 CCDC191Q8NCU4 936 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 MSLNLQ96KJ4 702 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 CHMP4AQ9BY43 222 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 PRKRIP1Q9H875 184 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-213ENST00000530784 CWC25Q9NXE8 425 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-213ENST00000530784 GGA3Q9NZ52 723 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 ITGB1BP2Q9UKP3 347 aa8.14□□□□□ -1.11
CSDE1-213ENST00000530784 FNDC1Q4ZHG4 1894 aaPredicted RBP8.14□□□□□ -1.11
CSDE1-213ENST00000530784 ZNF609O15014 1411 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 TAF1P21675 1872 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 F8W8V4 182 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 CD3EAPO15446 510 aaKnown RBP8.13□□□□□ -1.11
CSDE1-213ENST00000530784 ACVR2AP27037 513 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 HOXA4Q00056 320 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-213ENST00000530784 ZNF750Q32MQ0 723 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 CCDC30Q5VVM6 783 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 RGMBQ6NW40 437 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 ANKRD18AQ8IVF6 992 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 CYP2W1Q8TAV3 490 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 RSPRY1Q96DX4 576 aa8.13□□□□□ -1.11
CSDE1-213ENST00000530784 ZBTB45Q96K62 511 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-213ENST00000530784 DHX36Q9H2U1 1008 aaKnown RBP8.13□□□□□ -1.11
CSDE1-213ENST00000530784 DRG1Q9Y295 367 aaKnown RBP8.13□□□□□ -1.11
CSDE1-213ENST00000530784 FPR3P25089 353 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 CPT1AP50416 773 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 MTHFD1LQ6UB35 978 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 C8orf58Q8NAV2 365 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 AGBL3Q8NEM8 1001 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 CDCA5Q96FF9 252 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 BTBD1Q9H0C5 482 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 NUP62CLQ9H1M0 184 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 USP22Q9UPT9 525 aa8.12□□□□□ -1.11
CSDE1-213ENST00000530784 ASTN2O75129 1339 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-213ENST00000530784 TISP43B9A030 160 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 PSMD9O00233 223 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 PIAS2O75928 621 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 HGFP14210 728 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 RPL17P18621 184 aaKnown RBP8.11□□□□□ -1.11
CSDE1-213ENST00000530784 BTF3P20290 206 aaKnown RBP8.11□□□□□ -1.11
CSDE1-213ENST00000530784 EPHA3P29320 983 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 GKP32189 559 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 CARSP49589 748 aaKnown RBP8.11□□□□□ -1.11
CSDE1-213ENST00000530784 NEXNQ0ZGT2 675 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 PRAMEF17Q5VTA0 474 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 TRIM72Q6ZMU5 477 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 YAF2Q8IY57 180 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 PHKBQ93100 1093 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 TTC17Q96AE7 1141 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 SAGE1Q9NXZ1 904 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 DKK4Q9UBT3 224 aa8.11□□□□□ -1.11
CSDE1-213ENST00000530784 MED23Q9ULK4 1368 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 EXOC3O60645 756 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 PMPCBO75439 489 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 MT-ND5P03915 603 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 TPH1P17752 444 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 FKBP1BP68106 108 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 SLC10A2Q12908 348 aaPredicted RBP8.1□□□□□ -1.11
CSDE1-213ENST00000530784 STK3Q13188 491 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 RNASE12Q5GAN4 147 aaKnown RBP8.1□□□□□ -1.11
CSDE1-213ENST00000530784 ZKSCAN2Q63HK3 967 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 KIRREL2Q6UWL6 708 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 KSR2Q6VAB6 950 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 KRT78Q8N1N4 520 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 SIRT6Q8N6T7 355 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 TERB1Q8NA31 727 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 DAZAP1Q96EP5 407 aaKnown RBP8.1□□□□□ -1.11
CSDE1-213ENST00000530784 SNX22Q96L94 193 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 STRBPQ96SI9 672 aaKnown RBP8.1□□□□□ -1.11
CSDE1-213ENST00000530784 VN1R3Q9BXE9 311 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 MYOZ2Q9NPC6 264 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 CORO2BQ9UQ03 480 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 SNX13Q9Y5W8 968 aa8.1□□□□□ -1.11
CSDE1-213ENST00000530784 PI4KAP2A4QPH2 592 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 AGPSO00116 658 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 PQBP1O60828 265 aaKnown RBP8.09□□□□□ -1.11
CSDE1-213ENST00000530784 IGKV5-2P06315 115 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 IL1R2P27930 398 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 ABCG1P45844 678 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 RGS19P49795 217 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 TIRAPP58753 221 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 PSG6Q00889 435 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 TIAL1Q01085 375 aaKnown RBP eCLIP8.09□□□□□ -1.11
CSDE1-213ENST00000530784 PLAG1Q6DJT9 500 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 CHSY1Q86X52 802 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 TSPYL6Q8N831 410 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 PI4KAP1Q8N8J0 262 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 CIPCQ9C0C6 399 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 RNF186Q9NXI6 227 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 LPAR3Q9UBY5 353 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 AMFRQ9UKV5 643 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 PAPPA2Q9BXP8 1791 aa8.09□□□□□ -1.11
CSDE1-213ENST00000530784 MYO3BQ8WXR4 1341 aa8.08□□□□□ -1.12
CSDE1-213ENST00000530784 SCN9AQ15858 1988 aa8.08□□□□□ -1.12
CSDE1-213ENST00000530784 CES2O00748 559 aa8.08□□□□□ -1.12
CSDE1-213ENST00000530784 LATS1O95835 1130 aa8.08□□□□□ -1.12
CSDE1-213ENST00000530784 CELA2AP08217 269 aa8.08□□□□□ -1.12
CSDE1-213ENST00000530784 IGHMBP2P38935 993 aaKnown RBP8.08□□□□□ -1.12
CSDE1-213ENST00000530784 GATMP50440 423 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms