RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TRPA1O75762 1119 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 SRGAP2BP0DMP2 458 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 XIAPP98170 497 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 CDKL1Q00532 357 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 GRM1Q13255 1194 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 SMAD1Q15797 465 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 CNGA3Q16281 694 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 LRRC8BQ6P9F7 803 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 TMIGD2Q96BF3 282 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 HPDLQ96IR7 371 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 FDXACB1Q9BRP7 624 aaPredicted RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 PDGFCQ9NRA1 345 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 DOCK1Q14185 1865 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 FZD9O00144 591 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 DENRO43583 198 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 KRT37O76014 449 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 VTNP04004 478 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 NCF2P19878 526 aaPredicted RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 VARSP26640 1264 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 CBX3Q13185 183 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 DCTN2Q13561 401 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 TBCCQ15814 346 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 CELF3Q5SZQ8 465 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 GRIN3AQ8TCU5 1115 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 RXFP2Q8WXD0 754 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 SLC17A6Q9P2U8 582 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 ZNF711Q9Y462 761 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 APOC4-APOC2K7ER74 178 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 KCNN4O15554 427 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 TRMUO75648 421 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 APOC2P02655 101 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 P4HA1P13674 534 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 NELFEP18615 380 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 CDH5P33151 784 aaPredicted RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 SULT2A1Q06520 285 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 FASTKD1Q53R41 847 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 ZNF410Q86VK4 478 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 FBXW8Q8N3Y1 598 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 GALNT4Q8N4A0 578 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 C12orf29Q8N999 325 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 PPP1R14CQ8TAE6 165 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 PIWIL2Q8TC59 973 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 MAN1C1Q9NR34 630 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 GPRC5DQ9NZD1 345 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 APOBEC2Q9Y235 224 aaKnown RBP14.6□□□□□ -0.07
USP48-213ENST00000529637 F5H423 210 aaPredicted RBP14.59□□□□□ -0.07
USP48-213ENST00000529637 IQCF3P0C7M6 154 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 L1CAMP32004 1257 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 PTPN7P35236 360 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 STT3AP46977 705 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 YWHAZP63104 245 aaKnown RBP14.59□□□□□ -0.07
USP48-213ENST00000529637 TEDDM1Q5T9Z0 273 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 MOB2Q70IA6 237 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 PQLC1Q8N2U9 271 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 LHX5Q9H2C1 402 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 RNPEPQ9H4A4 650 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 RSAD1Q9HA92 442 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 FAM49BQ9NUQ9 324 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 RNF19AQ9NV58 838 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 THAP1Q9NVV9 213 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 DMTF1Q9Y222 760 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 EVPLQ92817 2033 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 ZBTB42B2RXF5 422 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 BTBD19C9JJ37 291 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 ADM5C9JUS6 153 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 DCXO43602 365 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 FBXO21O94952 628 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 IL18RAPO95256 599 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 TRUB2O95900 331 aaKnown RBP14.59□□□□□ -0.07
USP48-213ENST00000529637 APRTP07741 180 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 GPD1P21695 349 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 PHKA2P46019 1235 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 NDST1P52848 882 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 PPIDQ08752 370 aaKnown RBP14.59□□□□□ -0.07
USP48-213ENST00000529637 ZNF554Q86TJ5 538 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 UNC5BQ8IZJ1 945 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 NLRP7Q8WX94 980 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 PIWIL1Q96J94 861 aaKnown RBP14.59□□□□□ -0.07
USP48-213ENST00000529637 SMARCAD1Q9H4L7 1026 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 IFT122Q9HBG6 1241 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 CEPT1Q9Y6K0 416 aa14.59□□□□□ -0.07
USP48-213ENST00000529637 STRNO43815 780 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 GAS2O43903 313 aaKnown RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 CDH2P19022 906 aaPredicted RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 EDNRBP24530 442 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 IDH3AP50213 366 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 MRPS22P82650 360 aaKnown RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 DIS3LQ8TF46 1054 aaKnown RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 JADE3Q92613 823 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 ZNF512Q96ME7 567 aaPredicted RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 PEBP4Q96S96 227 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 FZD8Q9H461 694 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 ZC3H7BQ9UGR2 993 aaKnown RBP14.58□□□□□ -0.07
USP48-213ENST00000529637 RLFQ13129 1914 aa14.58□□□□□ -0.07
USP48-213ENST00000529637 PEX1O43933 1283 aa14.58□□□□□ -0.08
USP48-213ENST00000529637 ZBED1O96006 694 aa14.58□□□□□ -0.08
USP48-213ENST00000529637 INSRRP14616 1297 aa14.58□□□□□ -0.08
USP48-213ENST00000529637 SERPINB8P50452 374 aa14.58□□□□□ -0.08
USP48-213ENST00000529637 BCAR1P56945 870 aa14.58□□□□□ -0.08
USP48-213ENST00000529637 MBTD1Q05BQ5 628 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms