RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CELSR3Q9NYQ7 3312 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 GOLGA6L7A0A1B0GV03 622 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 KCNK3O14649 394 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 IGLV3-27P01718 113 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 DNTTP04053 509 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 SETSIPP0DME0 302 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 VDRP11473 427 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 SUZ12Q15022 739 aaKnown RBP24.53■■□□□ 1.52
CPSF1-202ENST00000527827 COL28A1Q2UY09 1125 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 MPP7Q5T2T1 576 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 PIK3R6Q5UE93 754 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 PDZD3Q86UT5 571 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 MARCH9Q86YJ5 346 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 LMLNQ96KR4 655 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 MTG2Q9H4K7 406 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 PLXNA2O75051 1894 aa24.53■■□□□ 1.52
CPSF1-202ENST00000527827 GOLGA8CPA6NN73 597 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 TBL1XO60907 577 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 FSBPO95073 299 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 ATP5BP06576 529 aaKnown RBP24.52■■□□□ 1.52
CPSF1-202ENST00000527827 LCP1P13796 627 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 CD27P26842 260 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 SLC6A4P31645 630 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 PRCPP42785 496 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 YWHAEP62258 255 aaKnown RBP24.52■■□□□ 1.52
CPSF1-202ENST00000527827 FAM133BQ5BKY9 247 aaKnown RBP24.52■■□□□ 1.52
CPSF1-202ENST00000527827 TFAP2BQ92481 460 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 IGSF8Q969P0 613 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 MYO19Q96H55 970 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 SGK2Q9HBY8 427 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 SUN2Q9UH99 717 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 RAXQ9Y2V3 346 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 IGSF10Q6WRI0 2623 aa24.52■■□□□ 1.52
CPSF1-202ENST00000527827 URB1O60287 2271 aaKnown RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 H0Y8X5 98 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 SLC16A3O15427 465 aaKnown RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 POLR2EP19388 210 aaKnown RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 TTC31Q49AM3 519 aaPredicted RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 ZNF776Q68DI1 518 aaPredicted RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 PMF1Q6P1K2 205 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 LCLAT1Q6UWP7 414 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 SLC35F5Q8WV83 523 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 GOLGA1Q92805 767 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 IRX2Q9BZI1 471 aaPredicted RBP24.51■■□□□ 1.51
CPSF1-202ENST00000527827 DKK4Q9UBT3 224 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 KIAA1257Q9ULG3 409 aa24.51■■□□□ 1.51
CPSF1-202ENST00000527827 TNFSF14O43557 240 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 PCDHGA12O60330 932 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 IGHV4-34P06331 123 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 CTSKP43235 329 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 RGS7P49802 495 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 PMS1P54277 932 aaKnown RBP24.5■■□□□ 1.51
CPSF1-202ENST00000527827 LRMPQ12912 555 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 PNOCQ13519 176 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 SOWAHCQ53LP3 525 aaPredicted RBP24.5■■□□□ 1.51
CPSF1-202ENST00000527827 NADSYN1Q6IA69 706 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 ZSWIM1Q9BR11 485 aa24.5■■□□□ 1.51
CPSF1-202ENST00000527827 RSPH9Q9H1X1 276 aaPredicted RBP24.5■■□□□ 1.51
CPSF1-202ENST00000527827 PIK3R2O00459 728 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 ACSL4O60488 711 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 GRK6P43250 576 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 SLC11A2P49281 568 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 CCT8P50990 548 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 CAMK2BQ13554 666 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 NUGGCQ68CJ6 796 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 ANKRD40Q6AI12 368 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 UNC45BQ8IWX7 931 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 CLEC4CQ8WTT0 213 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 IRGQQ8WZA9 623 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 SLC35C1Q96A29 364 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 TTC17Q96AE7 1141 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 MYEOVQ96EZ4 313 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 PRICKLE1Q96MT3 831 aaPredicted RBP24.49■■□□□ 1.51
CPSF1-202ENST00000527827 SCAND2PQ9GZW5 306 aaPredicted RBP24.49■■□□□ 1.51
CPSF1-202ENST00000527827 PABPC3Q9H361 631 aaKnown RBP24.49■■□□□ 1.51
CPSF1-202ENST00000527827 INTS6Q9UL03 887 aaKnown RBP24.49■■□□□ 1.51
CPSF1-202ENST00000527827 LOC400499M0QZD8 3231 aa24.49■■□□□ 1.51
CPSF1-202ENST00000527827 IRAK2O43187 625 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 TBXAS1P24557 533 aaPredicted RBP24.48■■□□□ 1.51
CPSF1-202ENST00000527827 TBX4P57082 545 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 FKBP3Q00688 224 aaKnown RBP24.48■■□□□ 1.51
CPSF1-202ENST00000527827 COBLL1Q53SF7 1204 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 KIAA0895LQ68EN5 471 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 USP30Q70CQ3 517 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 MFN1Q8IWA4 741 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 GALNT15Q8N3T1 639 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 FIBINQ8TAL6 211 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 HNRNPLLQ8WVV9 542 aaKnown RBP24.48■■□□□ 1.51
CPSF1-202ENST00000527827 AZIN2Q96A70 460 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 MRGPRX3Q96LB0 322 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 STIM2Q9P246 746 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 SERGEFQ9UGK8 458 aa24.48■■□□□ 1.51
CPSF1-202ENST00000527827 TRABD2BA6NFA1 517 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 RNF225M0QZC1 329 aaPredicted RBP24.47■■□□□ 1.51
CPSF1-202ENST00000527827 PAPSS1O43252 624 aaPredicted RBP24.47■■□□□ 1.51
CPSF1-202ENST00000527827 SIN3BO75182 1162 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 LTFP02788 710 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 PAEPP09466 180 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 IL9RQ01113 521 aa24.47■■□□□ 1.51
CPSF1-202ENST00000527827 SMAD1Q15797 465 aaKnown RBP24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms