RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	RETREG1	Q9H6L5	497 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	TBC1D17	Q9HA65	648 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	OSGEP	Q9NPF4	335 aa		21.46	■■□□□ 1.03
CD44-222	ENST00000526025	IGLV3-10	A0A075B6K4	115 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	MIP	P30301	263 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	TMEM196	Q5HYL7	178 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	EFHC2	Q5JST6	749 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	FBXL22	Q6P050	247 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	TXNDC11	Q6PKC3	985 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	ZNF683	Q8IZ20	524 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	LGI2	Q8N0V4	545 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	ZNF687	Q8N1G0	1237 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025	P2RY13	Q9BPV8	354 aa		21.45	■■□□□ 1.02
CD44-222	ENST00000526025		A0A0A0MRY4	1105 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	PRPSAP2	O60256	369 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	TULP3	O75386	442 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	DRD1	P21728	446 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	HTR7	P34969	479 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	ZNF135	P52742	658 aa	Predicted RBP	21.44	■■□□□ 1.02
CD44-222	ENST00000526025	SCYL2	Q6P3W7	929 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	LRRC31	Q6UY01	552 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	PHTF2	Q8N3S3	785 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	P2RY11	Q96G91	374 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	BTBD6	Q96KE9	485 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	EPHX3	Q9H6B9	360 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	LTB4R2	Q9NPC1	389 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	DEC1	Q9P2X7	70 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	PPARGC1A	Q9UBK2	798 aa	Known RBP	21.44	■■□□□ 1.02
CD44-222	ENST00000526025	FZD10	Q9ULW2	581 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	USP18	Q9UMW8	372 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	SLC27A6	Q9Y2P4	619 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025	ADGRG1	Q9Y653	693 aa		21.44	■■□□□ 1.02
CD44-222	ENST00000526025		A0A1B0GVM2	712 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	TCAF2	A6NFQ2	919 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	DRGX	A6NNA5	263 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	TSPAN3	O60637	253 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	L1CAM	P32004	1257 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	GALK1	P51570	392 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	SGSH	P51688	502 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	CCDC173	Q0VFZ6	552 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	GRSF1	Q12849	480 aa	Known RBP eCLIP	21.43	■■□□□ 1.02
CD44-222	ENST00000526025	BOLA3	Q53S33	107 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	ERMARD	Q5T6L9	678 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	MANEAL	Q5VSG8	457 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	CHST9	Q7L1S5	443 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	KIAA1328	Q86T90	577 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	C12orf40	Q86WS4	652 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	TEKT4	Q8WW24	435 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	RPRD1A	Q96P16	312 aa	Predicted RBP	21.43	■■□□□ 1.02
CD44-222	ENST00000526025	PNKP	Q96T60	521 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	SIK2	Q9H0K1	926 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	MFSD1	Q9H3U5	465 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	OR12D3	Q9UGF7	316 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	VANGL2	Q9ULK5	521 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	CHD5	Q8TDI0	1954 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	ZDBF2	Q9HCK1	2354 aa		21.43	■■□□□ 1.02
CD44-222	ENST00000526025	RCCD1	A6NED2	376 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025		E9PAM4	449 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	TBL1X	O60907	577 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	CISD3	P0C7P0	127 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	GRIA2	P42262	883 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	SLC1A1	P43005	524 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	CLCN5	P51795	746 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	RPS24	P62847	133 aa	Known RBP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	SLC25A11	Q02978	314 aa	Known RBP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	SEMA3B	Q13214	749 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	PON2	Q15165	354 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	HADH	Q16836	314 aa	Known RBP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	FBXO43	Q4G163	708 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	DGKK	Q5KSL6	1271 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	ARTN	Q5T4W7	220 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	GRAMD4	Q6IC98	578 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	SYNPO	Q8N3V7	929 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	PJA1	Q8NG27	643 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	CCDC26	Q8TAB7	109 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	MYEOV	Q96EZ4	313 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	PEBP4	Q96S96	227 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	DESI2	Q9BSY9	194 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	TMPRSS4	Q9NRS4	437 aa		21.42	■■□□□ 1.02
CD44-222	ENST00000526025	DNAJC17	Q9NVM6	304 aa	Known RBP	21.42	■■□□□ 1.02
CD44-222	ENST00000526025	NCAM2	O15394	837 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	GPR37L1	O60883	481 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	CLDN11	O75508	207 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	LUC7L3	O95232	432 aa	Known RBP	21.41	■■□□□ 1.02
CD44-222	ENST00000526025	APOD	P05090	189 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	PTMA	P06454	111 aa	Known RBP	21.41	■■□□□ 1.02
CD44-222	ENST00000526025	HOXC13	P31276	330 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	MAGEA9	P43362	315 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	DGKG	P49619	791 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	OXCT1	P55809	520 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	KIF5A	Q12840	1032 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	CCIN	Q13939	588 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	LRRC32	Q14392	662 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	CWF19L1	Q69YN2	538 aa	Known RBP	21.41	■■□□□ 1.02
CD44-222	ENST00000526025	FSTL4	Q6MZW2	842 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	C11orf63	Q6NUN7	778 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	ZNF662	Q6ZS27	426 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	NUDT18	Q6ZVK8	323 aa		21.41	■■□□□ 1.02

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