RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 DCLK3Q9C098 648 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 TMPRSS4Q9NRS4 437 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 CWC15Q9P013 229 aaKnown RBP13.5□□□□□ -0.25
CPNE3-205ENST00000522240 OR12D3Q9UGF7 316 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 NEU3Q9UQ49 428 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 CPQQ9Y646 472 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 DENND4AQ7Z401 1863 aa13.5□□□□□ -0.25
CPNE3-205ENST00000522240 APOC4-APOC2K7ER74 178 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 APOL1O14791 398 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 FGF10O15520 208 aaPredicted RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 LINC01565O15544 149 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 ACSL4O60488 711 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 PHF2O75151 1096 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 APOC2P02655 101 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 HMBSP08397 361 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 KRT10P13645 584 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 GOT1P17174 413 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 GJA1P17302 382 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 CEBPBP17676 345 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 TGM2P21980 687 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 CORO1AP31146 461 aaKnown RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 AVPR1AP37288 418 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 SLC11A2P49281 568 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 KCNQ1P51787 676 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 MLLT6P55198 1093 aaPredicted RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 TUBB4BP68371 445 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 NTHL1P78549 312 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 MS4A13Q5J8X5 152 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 STXBP5Q5T5C0 1151 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 PIK3R6Q5UE93 754 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 KAZNQ674X7 775 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 SYCE2Q6PIF2 218 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 CMTM8Q8IZV2 173 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 C12orf76Q8N812 135 aaPredicted RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 PCDH19Q8TAB3 1148 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 TBC1D31Q96DN5 1066 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 HEMGNQ9BXL5 484 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 MAK16Q9BXY0 300 aaKnown RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 SLC46A2Q9BY10 475 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 KIF9Q9HAQ2 790 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 ARHGEF4Q9NR80 690 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 HOMER3Q9NSC5 361 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 STOML2Q9UJZ1 356 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 LSM7Q9UK45 103 aaKnown RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 MRPS23Q9Y3D9 190 aaKnown RBP13.49□□□□□ -0.25
CPNE3-205ENST00000522240 HS3ST4Q9Y661 456 aa13.49□□□□□ -0.25
CPNE3-205ENST00000522240 IGLV3-10A0A075B6K4 115 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 TCRBV7S2A1N4TA0A589 114 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 E9PAM4 449 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FAM72CH0Y354 149 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 TNFRSF10AO00220 468 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 DCLK1O15075 740 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 CREB3O43889 395 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 CST8O60676 142 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 TBX10O75333 385 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 LRIG2O94898 1065 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FNTAP49354 379 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 USP4Q13107 963 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 ADGRE1Q14246 886 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FAM72AQ5TYM5 149 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FAM72DQ6L9T8 149 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 Q6ZNB5 142 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 CHSY1Q86X52 802 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FAM72BQ86X60 149 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 FAM217AQ8IXS0 508 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 ZNF683Q8IZ20 524 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 PQLC3Q8N755 202 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 PLD5Q8N7P1 536 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 KIAA1958Q8N8K9 716 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 PRELID2Q8N945 189 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 ADAMTS19Q8TE59 1207 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 RUNDC3BQ96NL0 473 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 PRMT1Q99873 361 aaKnown RBP13.48□□□□□ -0.25
CPNE3-205ENST00000522240 DDX50Q9BQ39 737 aaKnown RBP13.48□□□□□ -0.25
CPNE3-205ENST00000522240 ADAM7Q9H2U9 754 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 RETREG1Q9H6L5 497 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 RBM12Q9NTZ6 932 aaKnown RBP13.48□□□□□ -0.25
CPNE3-205ENST00000522240 SMPD4Q9NXE4 827 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 PPARGC1AQ9UBK2 798 aaKnown RBP13.48□□□□□ -0.25
CPNE3-205ENST00000522240 XPO7Q9UIA9 1087 aaKnown RBP13.48□□□□□ -0.25
CPNE3-205ENST00000522240 ZNF510Q9Y2H8 683 aa13.48□□□□□ -0.25
CPNE3-205ENST00000522240 EFCAB8A8MWE9 144 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 WASH4PA8MWX3 477 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 GREM1O60565 184 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 IRF1P10914 325 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 TACR2P21452 398 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 FSHRP23945 695 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 EPHB2P29323 1055 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 CHRNA3P32297 505 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 SERPINB6P35237 376 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 NR2C2P49116 596 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 ADCY2Q08462 1091 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 C2orf54Q08AI8 447 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 PAFAH1B3Q15102 231 aaKnown RBP13.47□□□□□ -0.25
CPNE3-205ENST00000522240 NOMO1Q15155 1222 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 CCNG2Q16589 344 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 C5orf22Q49AR2 442 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 FAM133BQ5BKY9 247 aaKnown RBP13.47□□□□□ -0.25
CPNE3-205ENST00000522240 ARTNQ5T4W7 220 aa13.47□□□□□ -0.25
CPNE3-205ENST00000522240 NCBP2-AS2Q69YL0 99 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms