RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SIKE1Q9BRV8 207 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 C12orf65Q9H3J6 166 aaKnown RBP15.28■□□□□ 0.04
NUP54-217ENST00000514987 TLE6Q9H808 572 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 HEY2Q9UBP5 337 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 DCTN4Q9UJW0 460 aa15.28■□□□□ 0.04
NUP54-217ENST00000514987 CCDC22O60826 627 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 GLRA3O75311 464 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 LTFP02788 710 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 SERPINB6P35237 376 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 GARSP41250 739 aaKnown RBP15.27■□□□□ 0.03
NUP54-217ENST00000514987 RAB27AP51159 221 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 HUNKP57058 714 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 ZNF33AQ06730 810 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 OVGP1Q12889 678 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 INSCQ1MX18 579 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 PLEKHG4Q58EX7 1191 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 ITPRIPL1Q6GPH6 555 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 BEND5Q7L4P6 421 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 ZNF567Q8N184 647 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 LRRN4Q8WUT4 740 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 EPAS1Q99814 870 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 SMOQ99835 787 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 TMEM120AQ9BXJ8 343 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 SLC13A1Q9BZW2 595 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 SPC25Q9HBM1 224 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 CSNK1G1Q9HCP0 422 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 ALG13Q9NP73 1137 aaKnown RBP15.27■□□□□ 0.03
NUP54-217ENST00000514987 DCDC2Q9UHG0 476 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 DSEQ9UL01 958 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 TRIM33Q9UPN9 1127 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 MFHAS1Q9Y4C4 1052 aa15.27■□□□□ 0.03
NUP54-217ENST00000514987 SYNJ2BP-COX16A0A087WUM0 186 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 MAGEB16A2A368 324 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 NRP1O14786 923 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 TNPO2O14787 897 aaKnown RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 PSMD3O43242 534 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 FYNP06241 537 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 BPGMP07738 259 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 ODC1P11926 461 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 ERCC2P18074 760 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 DNAJB2P25686 324 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 MGAT1P26572 445 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PSMB4P28070 264 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 CYP2C18P33260 490 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 MLH1P40692 756 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 GRIA1P42261 906 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PITX1P78337 314 aaPredicted RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 COG7P83436 770 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 TMPRSS15P98073 1019 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PPIDQ08752 370 aaKnown RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 BMPR2Q13873 1038 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 CRYMQ14894 314 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 WASHC2DQ5SRD0 308 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 MROH9Q5TGP6 573 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 KIAA0319Q5VV43 1072 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PID1Q7Z2X4 250 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 STKLD1Q8NE28 680 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 GSTCDQ8NEC7 633 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 ARMC2Q8NEN0 867 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 CFAP61Q8NHU2 1237 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 SKA1Q96BD8 255 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 SLC7A6OSQ96CW6 309 aaPredicted RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 PGBD4Q96DM1 585 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PCED1BQ96HM7 432 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 NSL1Q96IY1 281 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 GAD1Q99259 594 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 SENP6Q9GZR1 1112 aaPredicted RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 LRRC40Q9H9A6 602 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 KCNK13Q9HB14 408 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 WDR6Q9NNW5 1121 aaKnown RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 PCMTD2Q9NV79 361 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 NOP53Q9NZM5 478 aaKnown RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 COX16Q9P0S2 106 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 SEPT10Q9P0V9 454 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 KLHL8Q9P2G9 620 aaPredicted RBP15.26■□□□□ 0.03
NUP54-217ENST00000514987 TXNDC16Q9P2K2 825 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 KANSL3Q9P2N6 904 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 ADAM28Q9UKQ2 775 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 DOCK3Q8IZD9 2030 aa15.26■□□□□ 0.03
NUP54-217ENST00000514987 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.25■□□□□ 0.03
NUP54-217ENST00000514987 HMX2A2RU54 273 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ARL5CA6NH57 179 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 YJEFN3A6XGL0 299 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 E7ENQ6 273 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 UGT1A9O60656 530 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 ZNF623O75123 536 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 AP2A1O95782 977 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 C6orf222P0C671 652 aaPredicted RBP15.25■□□□□ 0.03
NUP54-217ENST00000514987 NCAM1P13591 858 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 CXCR3P49682 368 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 SESN2P58004 480 aaPredicted RBP15.25■□□□□ 0.03
NUP54-217ENST00000514987 CTC1Q2NKJ3 1217 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 GNASQ5JWF2 1037 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 GRTP1Q5TC63 336 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 PACS1Q6VY07 963 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 CDHR3Q6ZTQ4 885 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 HFE2Q6ZVN8 426 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 SERINC5Q86VE9 423 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 RASAL3Q86YV0 1011 aa15.25■□□□□ 0.03
NUP54-217ENST00000514987 CRLF3Q8IUI8 442 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms